About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46964PROTEIN CBG26694
Paelopatides46965-
Paelopatides46966PROTEASE M14 CARBOXYPEPTIDASE
Paelopatides46967FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46968-
Paelopatides46969HOMEOBOX PROTEIN, PUTATIVE-RELATED
Paelopatides46970IQ DOMAIN-CONTAINING PROTEIN H
Paelopatides46971-
Paelopatides46972SYNTENIN RELATED
Paelopatides46973-
Paelopatides46974REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides46975-
Paelopatides46976-
Paelopatides46977METHYLTRANSFERASE TYPE 11
Paelopatides46978ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Paelopatides46979ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Paelopatides46980FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46981FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46982-
Paelopatides46983-
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