About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s015.g0177.t1
Lsat_s015.g0178.t1
Lsat_s015.g0179.t1UNCHARACTERIZED
Lsat_s015.g0180.t1GLYCOSYL TRANSFERASE-RELATED
Lsat_s015.g0181.t1CT120 PROTEIN
Lsat_s015.g0182.t1ANTERIOR GRADIENT PROTEIN-RELATED
Lsat_s015.g0183.t1ATP-DEPENDENT RNA AND DNA HELICASE
Lsat_s015.g0184.t1SNF2/RAD54 FAMILY MEMBER
Lsat_s015.g0185.t1E3 UBIQUITIN-PROTEIN LIGASE TOPORS
Lsat_s015.g0186.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7
Lsat_s015.g0187.t1UNCHARACTERIZED
Lsat_s015.g0188.t1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Lsat_s015.g0189.t1
Lsat_s015.g0190.t1
Lsat_s015.g0191.t1JOUBERIN
Lsat_s015.g0192.t1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
Lsat_s015.g0193.t1TETRATRICOPEPTIDE REPEAT PROTEIN 4
Lsat_s015.g0194.t1DIMETHYLADENOSINE TRANSFERASE
Lsat_s015.g0195.t1STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
Lsat_s015.g0196.t1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
Lsat_s015.g0197.t1
Lsat_s015.g0198.t1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
Lsat_s015.g0199.t1
Lsat_s015.g0200.t1
Lsat_s015.g0201.t1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Lsat_s015.g0202.t1
Lsat_s015.g0203.t1
Lsat_s015.g0204.t1
Lsat_s015.g0205.t1NOTCH LIGAND FAMILY MEMBER
Lsat_s015.g0206.t1
Lsat_s015.g0207.t1
Lsat_s015.g0208.t1
Lsat_s015.g0209.t140S RIBOSOMAL PROTEIN S12
Lsat_s015.g0210.t1
Lsat_s015.g0211.t1
Lsat_s015.g0212.t1CENTROSOMAL PROTEIN-RELATED
Lsat_s015.g0213.t1
Lsat_s015.g0214.t1
Lsat_s015.g0215.t1
Lsat_s015.g0216.t1
Lsat_s015.g0217.t1
Lsat_s015.g0218.t1
Lsat_s015.g0219.t1TGF-BETA FAMILY
Lsat_s015.g0220.t1
Lsat_s015.g0221.t1
Lsat_s015.g0222.t1KETOACID-COENZYME A TRANSFERASE
Lsat_s015.g0223.t1PLAT DOMAIN-CONTAINING PROTEIN
Lsat_s015.g0224.t1REPLICATION PROTEIN A-RELATED
Lsat_s015.g0225.t1
Lsat_s015.g0226.t1REPLICATION PROTEIN A-RELATED
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