Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s015.g0027.t1 | SPLICING FACTOR 3B SUBUNIT 5 |
| Lsat_s015.g0028.t1 | REGULATOR OF CHROMOSOME CONDENSATION |
| Lsat_s015.g0029.t1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| Lsat_s015.g0030.t1 | |
| Lsat_s015.g0031.t1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Lsat_s015.g0032.t1 | |
| Lsat_s015.g0033.t1 | SERINE/THREONINE-PROTEIN KINASE |
| Lsat_s015.g0034.t1 | |
| Lsat_s015.g0035.t1 | |
| Lsat_s015.g0036.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| Lsat_s015.g0037.t1 | |
| Lsat_s015.g0038.t1 | |
| Lsat_s015.g0039.t1 | WD REPEAT-CONTAINING PROTEIN 61 |
| Lsat_s015.g0040.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN 23 |
| Lsat_s015.g0041.t1 | TALIN ROD DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s015.g0042.t1 | ANKYRIN REPEAT PROTEIN |
| Lsat_s015.g0043.t1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
| Lsat_s015.g0044.t1 | DNA LIGASE |
| Lsat_s015.g0045.t1 | CYTOKINE RECEPTOR |
| Lsat_s015.g0046.t1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Lsat_s015.g0047.t1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Lsat_s015.g0048.t1 | |
| Lsat_s015.g0049.t1 | L 2 01289 |
| Lsat_s015.g0050.t1 | |
| Lsat_s015.g0051.t1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Lsat_s015.g0052.t1 | |
| Lsat_s015.g0053.t1 | UNCHARACTERIZED |
| Lsat_s015.g0054.t1 | |
| Lsat_s015.g0055.t1 | |
| Lsat_s015.g0056.t1 | NUCLEAR FACTOR INTERLEUKIN-3-REGULATED PROTEIN |
| Lsat_s015.g0057.t1 | |
| Lsat_s015.g0058.t1 | |
| Lsat_s015.g0059.t1 | |
| Lsat_s015.g0060.t1 | PROTHORACICOTROPIC HORMONE, ISOFORM F |
| Lsat_s015.g0061.t1 | |
| Lsat_s015.g0062.t1 | NUCLEAR PORE COMPLEX PROTEIN NUP155 |
| Lsat_s015.g0063.t1 | - |
| Lsat_s015.g0064.t1 | - |
| Lsat_s015.g0065.t1 | MYOSIN REGULATORY LIGHT CHAIN 2 |
| Lsat_s015.g0066.t1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
| Lsat_s015.g0067.t1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Lsat_s015.g0068.t1 | CGI-140 |
| Lsat_s015.g0069.t1 | |
| Lsat_s015.g0070.t1 | |
| Lsat_s015.g0071.t1 | PALMITOYLTRANSFERASE ZDHHC16 |
| Lsat_s015.g0072.t1 | SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN |
| Lsat_s015.g0073.t1 | |
| Lsat_s015.g0074.t1 | |
| Lsat_s015.g0075.t1 | UNCHARACTERIZED |
| Lsat_s015.g0076.t1 |
