Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s014.g0208.t1 | |
| Lsat_s014.g0209.t1 | |
| Lsat_s014.g0210.t1 | ESTERASE OVCA2 |
| Lsat_s014.g0211.t1 | MOLTING PROTEIN MLT-4 |
| Lsat_s014.g0212.t1 | PROLINE IMINOPEPTIDASE |
| Lsat_s014.g0213.t1 | |
| Lsat_s014.g0214.t1 | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT |
| Lsat_s014.g0215.t1 | |
| Lsat_s014.g0216.t1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| Lsat_s014.g0217.t1 | LSM12 HOMOLOG |
| Lsat_s014.g0218.t1 | FTP DOMAIN-CONTAINING PROTEIN |
| Lsat_s014.g0219.t1 | POLYCYSTIN FAMILY MEMBER |
| Lsat_s014.g0220.t1 | POLYCYSTIN FAMILY MEMBER |
| Lsat_s014.g0221.t1 | POLYCYSTIN FAMILY MEMBER |
| Lsat_s014.g0222.t1 | POLYCYSTIN FAMILY MEMBER |
| Lsat_s014.g0223.t1 | WD40 REPEAT PROTEIN 12, 37 |
| Lsat_s014.g0224.t1 | RGD1565685 PROTEIN |
| Lsat_s014.g0225.t1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Lsat_s014.g0226.t1 | |
| Lsat_s014.g0227.t1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Lsat_s014.g0228.t1 | |
| Lsat_s014.g0229.t1 | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 |
| Lsat_s014.g0230.t1 | |
| Lsat_s014.g0231.t1 | |
| Lsat_s014.g0232.t1 | DUF614 FAMILY PROTEIN-RELATED |
| Lsat_s014.g0233.t1 | TELOMERE-ASSOCIATED PROTEIN RIF1 |
| Lsat_s014.g0234.t1 | UNCHARACTERIZED |
| Lsat_s014.g0235.t1 | |
| Lsat_s014.g0236.t1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| Lsat_s014.g0237.t1 | |
| Lsat_s014.g0238.t1 | |
| Lsat_s014.g0239.t1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| Lsat_s014.g0240.t1 | |
| Lsat_s014.g0241.t1 | PHISTB DOMAIN-CONTAINING RESA-LIKE PROTEIN 1 |
| Lsat_s014.g0242.t1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
| Lsat_s014.g0243.t1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| Lsat_s014.g0244.t1 | CENTROMERE PROTEIN E |
| Lsat_s014.g0245.t1 | BETA-GALACTOSIDASE RELATED |
| Lsat_s014.g0246.t1 | SENTRIN/SUMO-SPECIFIC PROTEASE |
| Lsat_s014.g0247.t1 | POLY [ADP-RIBOSE] POLYMERASE |
| Lsat_s014.g0248.t1 | |
| Lsat_s014.g0249.t1 | CELL DIVISION PROTEIN KINASE |
| Lsat_s014.g0250.t1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| Lsat_s014.g0251.t1 | VESICULAR, OVEREXPRESSED IN CANCER, PROSURVIVAL PROTEIN 1 |
| Lsat_s014.g0252.t1 | UNCHARACTERIZED |
| Lsat_s014.g0253.t1 | 26S PROTEASOME REGULATORY SUBUNIT |
| Lsat_s014.g0254.t1 | ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s014.g0255.t1 | |
| Lsat_s014.g0256.t1 | |
| Lsat_s014.g0257.t1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
