Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s014.g0458.t1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Lsat_s014.g0459.t1 | SERINE-THREONINE PROTEIN KINASE |
| Lsat_s014.g0460.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Lsat_s014.g0461.t1 | |
| Lsat_s014.g0462.t1 | |
| Lsat_s014.g0463.t1 | |
| Lsat_s014.g0464.t1 | WOLFRAMIN |
| Lsat_s014.g0465.t1 | WOLFRAMIN |
| Lsat_s014.g0466.t1 | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE |
| Lsat_s014.g0467.t1 | METALLOPROTEASE TLDD |
| Lsat_s014.g0468.t1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Lsat_s014.g0469.t1 | REPETIN |
| Lsat_s014.g0470.t1 | INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN |
| Lsat_s014.g0471.t1 | |
| Lsat_s014.g0472.t1 | INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN |
| Lsat_s014.g0473.t1 | SORTING NEXIN |
| Lsat_s014.g0474.t1 | UNCHARACTERIZED |
| Lsat_s014.g0475.t1 | |
| Lsat_s014.g0476.t1 | UNCHARACTERIZED |
| Lsat_s014.g0477.t1 | ZINC FINGER PROTEIN |
| Lsat_s014.g0478.t1 | |
| Lsat_s014.g0479.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Lsat_s014.g0480.t1 | |
| Lsat_s014.g0481.t1 | |
| Lsat_s015.g0001.t1 | |
| Lsat_s015.g0002.t1 | |
| Lsat_s015.g0003.t1 | |
| Lsat_s015.g0004.t1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
| Lsat_s015.g0005.t1 | ADENINE DNA GLYCOSYLASE |
| Lsat_s015.g0006.t1 | |
| Lsat_s015.g0007.t1 | |
| Lsat_s015.g0008.t1 | |
| Lsat_s015.g0009.t1 | HEPARAN SULFATE SULFOTRANSFERASE |
| Lsat_s015.g0010.t1 | HEPARAN SULFATE SULFOTRANSFERASE |
| Lsat_s015.g0011.t1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Lsat_s015.g0012.t1 | |
| Lsat_s015.g0013.t1 | |
| Lsat_s015.g0014.t1 | |
| Lsat_s015.g0015.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Lsat_s015.g0016.t1 | POLYCOMB GROUP PROTEIN |
| Lsat_s015.g0017.t1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN |
| Lsat_s015.g0018.t1 | TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER |
| Lsat_s015.g0019.t1 | - |
| Lsat_s015.g0020.t1 | NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED |
| Lsat_s015.g0021.t1 | DUAL OXIDASE 2 |
| Lsat_s015.g0022.t1 | NADPH OXIDASE |
| Lsat_s015.g0023.t1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 |
| Lsat_s015.g0024.t1 | NADPH OXIDASE |
| Lsat_s015.g0025.t1 | DUAL OXIDASE 2 |
| Lsat_s015.g0026.t1 | TRANSLATION FACTOR |
