About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s015.g0327.t1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
Lsat_s015.g0328.t1PERFORIN-LIKE PROTEIN 1
Lsat_s015.g0329.t1TRANSLATION INITIATION FACTOR EIF-2B
Lsat_s015.g0330.t1V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT
Lsat_s015.g0331.t1
Lsat_s015.g0332.t1
Lsat_s015.g0333.t1
Lsat_s015.g0334.t1TYROSINE-PROTEIN KINASE RECEPTOR
Lsat_s015.g0335.t1
Lsat_s015.g0336.t1MATRIX METALLOPROTEINASE
Lsat_s015.g0337.t1SMALL NUCLEAR RIBONUCLEOPROTEIN SM
Lsat_s015.g0338.t1METALLOPROTEASE TIKI
Lsat_s015.g0339.t1ZINC FINGER PROTEIN
Lsat_s015.g0340.t1YTH YT521-B HOMOLOGY DOMAIN-CONTAINING
Lsat_s015.g0341.t1SARCOGLYCAN
Lsat_s015.g0342.t1UNCHARACTERIZED
Lsat_s015.g0343.t1HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED
Lsat_s015.g0344.t1CYTOKINE RECEPTOR
Lsat_s015.g0345.t1
Lsat_s015.g0346.t1PROTEIN CBG10425
Lsat_s015.g0347.t1
Lsat_s015.g0348.t1INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Lsat_s015.g0349.t1
Lsat_s015.g0350.t1TESTIS-EXPRESSED PROTEIN 15
Lsat_s015.g0351.t1
Lsat_s015.g0352.t1RAS-RELATED PROTEIN RAB
Lsat_s015.g0353.t1GH03947P
Lsat_s015.g0354.t1STATHMIN
Lsat_s015.g0355.t1TRANSMEMBRANE PROTEIN 59-LIKE PROTEIN
Lsat_s015.g0356.t1GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1
Lsat_s015.g0357.t1
Lsat_s015.g0358.t1
Lsat_s015.g0359.t1DNAJ HOMOLOG SUBFAMILY B
Lsat_s015.g0360.t1
Lsat_s015.g0361.t1SPERMATOGENESIS ASSOCIATED 11-RELATED
Lsat_s015.g0362.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57
Lsat_s015.g0363.t1
Lsat_s015.g0364.t1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Lsat_s015.g0365.t13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
Lsat_s015.g0366.t1DNAJ HOMOLOG SUBFAMILY C MEMBER
Lsat_s015.g0367.t1
Lsat_s015.g0368.t1PROTEIN CBG26694
Lsat_s015.g0369.t1WD-40 REPEAT PROTEIN
Lsat_s015.g0370.t1SNF2/RAD54 FAMILY MEMBER
Lsat_s015.g0371.t1HISTONE H3 METHYLTRANSFERASE
Lsat_s015.g0372.t1GEMININ
Lsat_s015.g0373.t1BONUS, ISOFORM C-RELATED
Lsat_s015.g0374.t1
Lsat_s015.g0375.t1ARMADILLO REPEAT CONTAINING 2
Lsat_s015.g0376.t1SMAD
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