About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03450CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03451THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1
Paelopatides03452-
Paelopatides03453-
Paelopatides03454HOMEOBOX PROTEIN ABDOMINAL-B
Paelopatides03455ENDONUCLEASE-RELATED
Paelopatides03456-
Paelopatides03457TIGHT JUNCTION-ASSOCIATED PROTEIN 1
Paelopatides03458-
Paelopatides03459ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides03460REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03461CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03462-
Paelopatides03463BONUS, ISOFORM C-RELATED
Paelopatides03464-
Paelopatides03465NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides03466RETROTRANSPOSON
Paelopatides03467RETROTRANSPOSON
Paelopatides03468PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides03469IP13529P
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