About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03323DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides03324SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 1
Paelopatides03325-
Paelopatides03326-
Paelopatides03327-
Paelopatides03328GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2
Paelopatides03329PROTEIN CBG26694
Paelopatides03330PROTEIN CBG26694
Paelopatides03331ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03332PROTEIN CBG26694
Paelopatides03333-
Paelopatides03334-
Paelopatides03335REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03336GTP-BINDING PROTEIN-RELATED
Paelopatides03337LD30288P
Paelopatides03338-
Paelopatides03339GLUTAREDOXIN
Paelopatides03340GLUTAREDOXIN
Paelopatides03341-
Paelopatides03342PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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