About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03197ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides03198-
Paelopatides03199PROTEIN CBG26694
Paelopatides03201ANKYRIN REPEAT CONTAINING
Paelopatides03202ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Paelopatides03203-
Paelopatides03204SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides03205TYROSINE-PROTEIN KINASE
Paelopatides03206-
Paelopatides03207-
Paelopatides03208PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides03209RETROTRANSPOSON
Paelopatides03210RETROTRANSPOSON
Paelopatides03211DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Paelopatides03212-
Paelopatides03213CYSTEINE PROTEASE ATG4
Paelopatides03214-
Paelopatides03215CYSTEINE PROTEASE ATG4
Paelopatides03216-
Paelopatides03217-
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