About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03218TYROSINE-PROTEIN KINASE
Paelopatides03220-
Paelopatides03221KPL2-RELATED
Paelopatides03222KPL2-RELATED
Paelopatides03223TRANSMEMBRANE PROTEIN CCDC163
Paelopatides03224DPY-19-LIKE 1, LIKE (H. SAPIENS)
Paelopatides03225DPY-19-LIKE 1, LIKE (H. SAPIENS)
Paelopatides03226-
Paelopatides03227-
Paelopatides03228KRAB AND ZINC FINGER DOMAIN-CONTAINING
Paelopatides03229GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides03230ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides03231ORIGIN RECOGNITION COMPLEX SUBUNIT 5
Paelopatides03232THIOSULFATE SULFERTANSFERASE
Paelopatides03233-
Paelopatides03234NETRIN RECEPTOR UNC5
Paelopatides03235INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides03236CRANIOFACIAL DEVELOPMENT PROTEIN 1
Paelopatides03238FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides03239DUF3504 DOMAIN-CONTAINING PROTEIN
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