About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03281PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides03282-
Paelopatides03283ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Paelopatides03284ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Paelopatides03285MULTICOPPER OXIDASE-RELATED
Paelopatides03286MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Paelopatides03289-
Paelopatides03290-
Paelopatides03291-
Paelopatides03292-
Paelopatides03293PHOSDUCIN-LIKE PROTEIN
Paelopatides03294PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides03295PHOSDUCIN-LIKE PROTEIN
Paelopatides03296POL PROTEIN
Paelopatides03297-
Paelopatides03298-
Paelopatides03299ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides03300-
Paelopatides03301PROTEIN CBG26694
Paelopatides03302TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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