About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03240L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides03241-
Paelopatides03242EPM2A-INTERACTING PROTEIN 1
Paelopatides03243VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 62-RELATED
Paelopatides03244-
Paelopatides03245RETROTRANSPOSON
Paelopatides03246RETROTRANSPOSON
Paelopatides03247REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03248-
Paelopatides03249INTERFERON ALPHA-INDUCIBLE PROTEIN 27
Paelopatides03250PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides03251FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides03252GAG-RELATED PROTEIN
Paelopatides03253PROTEIN CBG26694
Paelopatides03254-
Paelopatides03255ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides03256PLEXIN
Paelopatides03257REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03258REVERSE TRANSCRIPTASES
Paelopatides03260FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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