About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03363PROTEIN CBG26694
Paelopatides03364FUMARATE HYDRATASE-RELATED
Paelopatides03365-
Paelopatides03366REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03367BUCENTAUR RELATED
Paelopatides03368NUCLEAR PORE COMPLEX PROTEIN NUP
Paelopatides03369PROTEIN CBG26694
Paelopatides03370ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides03371-
Paelopatides03372REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03373METHIONINE SULFOXIDE REDUCTASE
Paelopatides03374TRANSPOSABLE ELEMENT-RELATED
Paelopatides03375PROTEIN CBG26694
Paelopatides03376ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides03377ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides03378PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides03379ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides03380ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides03381ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides03382-
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