Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_008324-T1 | TARGET OF ERK KINASE MPK-1 |
LLU|FUN_008325-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
LLU|FUN_008326-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
LLU|FUN_008327-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
LLU|FUN_008328-T1 | TYROSINE-PROTEIN KINASE |
LLU|FUN_008329-T1 | CALPAIN |
LLU|FUN_008330-T1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
LLU|FUN_008331-T1 | |
LLU|FUN_008332-T1 | BNIP - RELATED |
LLU|FUN_008333-T1 | BNIP - RELATED |
LLU|FUN_008334-T1 | MYOSIN LIGHT CHAIN 1, 3 |
LLU|FUN_008335-T1 | SOLUTE CARRIER FAMILY 25 |
LLU|FUN_008336-T1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
LLU|FUN_008337-T1 | |
LLU|FUN_008338-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 8 |
LLU|FUN_008339-T1 | KICSTOR COMPLEX PROTEIN SZT2 |
LLU|FUN_008340-T1 | KICSTOR COMPLEX PROTEIN SZT2 |
LLU|FUN_008341-T1 | |
LLU|FUN_008342-T1 | |
LLU|FUN_008343-T1 | |
LLU|FUN_008344-T1 | |
LLU|FUN_008345-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_008348-T1 | |
LLU|FUN_008350-T1 | |
LLU|FUN_008351-T1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
LLU|FUN_008354-T1 | |
LLU|FUN_008355-T1 | |
LLU|FUN_008356-T1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 |
LLU|FUN_008357-T1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 |
LLU|FUN_008358-T1 | SPERMATID WD-REPEAT PROTEIN |
LLU|FUN_008359-T1 | SPINSTER |
LLU|FUN_008360-T1 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 2 |
LLU|FUN_008361-T1 | |
LLU|FUN_008362-T1 | |
LLU|FUN_008363-T1 | |
LLU|FUN_008364-T1 | RHO FAMILY GTPASE |
LLU|FUN_008365-T1 | - |
LLU|FUN_008366-T1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
LLU|FUN_008367-T1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
LLU|FUN_008368-T1 | |
LLU|FUN_008369-T1 | |
LLU|FUN_008370-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
LLU|FUN_008371-T1 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
LLU|FUN_008372-T1 | |
LLU|FUN_008373-T1 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
LLU|FUN_008374-T1 | |
LLU|FUN_008375-T1 | |
LLU|FUN_008376-T1 | GUANYLYL CYCLASE |
LLU|FUN_008377-T1 | |
LLU|FUN_008378-T1 | GUANYLYL CYCLASE |