Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_008020-T1 | |
LLU|FUN_008021-T1 | |
LLU|FUN_008022-T1 | PROKARYOTIC DNA TOPOISOMERASE |
LLU|FUN_008023-T1 | PROTEIN CCSMST1 |
LLU|FUN_008024-T1 | HISTONE H3 |
LLU|FUN_008025-T1 | UNKEMPT FAMILY MEMBER |
LLU|FUN_008026-T1 | ACYL-COENZYME A SYNTHETASE |
LLU|FUN_008027-T1 | ACYL-COENZYME A SYNTHETASE |
LLU|FUN_008028-T1 | |
LLU|FUN_008029-T1 | |
LLU|FUN_008030-T1 | ACYL-COENZYME A SYNTHETASE |
LLU|FUN_008031-T1 | UPF0193 PROTEIN EVG1 |
LLU|FUN_008032-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
LLU|FUN_008033-T1 | WD-40 REPEAT PROTEIN |
LLU|FUN_008034-T1 | BRCA1-ASSOCIATED ATM ACTIVATOR 1 |
LLU|FUN_008035-T1 | METALLOPROTEASE |
LLU|FUN_008036-T1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
LLU|FUN_008037-T1 | ET TRANSLATION PRODUCT-RELATED |
LLU|FUN_008038-T1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
LLU|FUN_008039-T1 | |
LLU|FUN_008040-T1 | |
LLU|FUN_008041-T1 | SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2 |
LLU|FUN_008042-T1 | POLYKETIDE SYNTHASE-RELATED |
LLU|FUN_008043-T1 | |
LLU|FUN_008044-T1 | |
LLU|FUN_008045-T1 | |
LLU|FUN_008046-T1 | CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN |
LLU|FUN_008047-T1 | IRE1-RELATED |
LLU|FUN_008048-T1 | UNCHARACTERIZED |
LLU|FUN_008049-T1 | UNCHARACTERIZED |
LLU|FUN_008050-T1 | |
LLU|FUN_008051-T1 | |
LLU|FUN_008052-T1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
LLU|FUN_008053-T1 | MUSCLEBLIND-LIKE PROTEIN |
LLU|FUN_008054-T1 | |
LLU|FUN_008055-T1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 7 |
LLU|FUN_008056-T1 | - |
LLU|FUN_008057-T1 | |
LLU|FUN_008058-T1 | N-ALPHA-ACETYLTRANSFERASE 20 |
LLU|FUN_008059-T1 | |
LLU|FUN_008060-T1 | PRE-MRNA SPLICING FACTOR |
LLU|FUN_008061-T1 | UNCHARACTERIZED |
LLU|FUN_008062-T1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_008063-T1 | |
LLU|FUN_008064-T1 | |
LLU|FUN_008065-T1 | |
LLU|FUN_008066-T1 | 4-NITROPHENYLPHOSPHATASE-RELATED |
LLU|FUN_008067-T1 | |
LLU|FUN_008068-T1 | |
LLU|FUN_008069-T1 | 4-NITROPHENYLPHOSPHATASE-RELATED |