Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_007767-T1 | |
LLU|FUN_007768-T1 | REPETIN |
LLU|FUN_007769-T1 | SPERMATHECAL PHYSIOLOGY VARIANT |
LLU|FUN_007770-T1 | |
LLU|FUN_007771-T1 | SPERMATHECAL PHYSIOLOGY VARIANT |
LLU|FUN_007772-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_007773-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
LLU|FUN_007774-T1 | |
LLU|FUN_007775-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
LLU|FUN_007776-T1 | |
LLU|FUN_007777-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_007778-T1 | |
LLU|FUN_007779-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_007780-T1 | |
LLU|FUN_007781-T1 | |
LLU|FUN_007782-T1 | |
LLU|FUN_007783-T1 | |
LLU|FUN_007784-T1 | |
LLU|FUN_007785-T1 | |
LLU|FUN_007786-T1 | |
LLU|FUN_007787-T1 | |
LLU|FUN_007788-T1 | |
LLU|FUN_007789-T1 | |
LLU|FUN_007790-T1 | |
LLU|FUN_007791-T1 | |
LLU|FUN_007792-T1 | ZINC FINGER PROTEIN 142 |
LLU|FUN_007793-T1 | TRANSCRIPTIONAL REPRESSOR PROTEIN YY |
LLU|FUN_007794-T1 | |
LLU|FUN_007795-T1 | NEURALIZED |
LLU|FUN_007796-T1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_007797-T1 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
LLU|FUN_007798-T1 | ALKALINE PHOSPHATASE |
LLU|FUN_007799-T1 | ALKALINE PHOSPHATASE |
LLU|FUN_007800-T1 | FIBRILLIN-RELATED |
LLU|FUN_007801-T1 | |
LLU|FUN_007802-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_007803-T1 | |
LLU|FUN_007804-T1 | |
LLU|FUN_007805-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
LLU|FUN_007806-T1 | |
LLU|FUN_007807-T1 | MSF1/PX19 RELATED |
LLU|FUN_007808-T1 | UNC-93 RELATED |
LLU|FUN_007809-T1 | SI:CH211-266K2.1 |
LLU|FUN_007810-T1 | DUF853 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_007811-T1 | NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 8 |
LLU|FUN_007812-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
LLU|FUN_007813-T1 | |
LLU|FUN_007814-T1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
LLU|FUN_007815-T1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
LLU|FUN_007816-T1 |