Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_007667-T1 | |
LLU|FUN_007668-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_007669-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_007670-T1 | PROTEIN CBG24663 |
LLU|FUN_007671-T1 | WD40 REPEAT PF20 |
LLU|FUN_007672-T1 | |
LLU|FUN_007673-T1 | |
LLU|FUN_007674-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_007675-T1 | |
LLU|FUN_007676-T1 | |
LLU|FUN_007677-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_007678-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_007679-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_007680-T1 | |
LLU|FUN_007681-T1 | |
LLU|FUN_007682-T1 | - |
LLU|FUN_007683-T1 | NOTCH LIGAND FAMILY MEMBER |
LLU|FUN_007684-T1 | MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER |
LLU|FUN_007685-T1 | |
LLU|FUN_007686-T1 | |
LLU|FUN_007687-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
LLU|FUN_007688-T1 | |
LLU|FUN_007689-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
LLU|FUN_007690-T1 | |
LLU|FUN_007691-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 32 |
LLU|FUN_007692-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
LLU|FUN_007693-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
LLU|FUN_007694-T1 | |
LLU|FUN_007695-T1 | IRE1-RELATED |
LLU|FUN_007696-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_007697-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_007698-T1 | UPF0184 PROTEIN C9ORF16 |
LLU|FUN_007699-T1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
LLU|FUN_007700-T1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
LLU|FUN_007701-T1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
LLU|FUN_007702-T1 | |
LLU|FUN_007703-T1 | AGAP001331-PA-RELATED |
LLU|FUN_007704-T1 | |
LLU|FUN_007705-T1 | OS10G0105400 PROTEIN |
LLU|FUN_007706-T1 | |
LLU|FUN_007707-T1 | |
LLU|FUN_007708-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_007709-T1 | FI01416P |
LLU|FUN_007710-T1 | FLAVIN MONOAMINE OXIDASE |
LLU|FUN_007711-T1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 5 |
LLU|FUN_007712-T1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
LLU|FUN_007713-T1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
LLU|FUN_007714-T1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
LLU|FUN_007715-T1 | |
LLU|FUN_007716-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |