About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_007717-T1
LLU|FUN_007718-T1ZINC FINGER PROTEIN
LLU|FUN_007719-T1RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
LLU|FUN_007720-T1UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN
LLU|FUN_007721-T1PHOSPHATIDYLINOSITOL KINASE
LLU|FUN_007722-T1
LLU|FUN_007723-T1HCLS1-BINDING PROTEIN 3
LLU|FUN_007724-T1
LLU|FUN_007725-T1EG:EG0003.4 PROTEIN-RELATED
LLU|FUN_007726-T1
LLU|FUN_007727-T1
LLU|FUN_007728-T1
LLU|FUN_007729-T1
LLU|FUN_007730-T1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
LLU|FUN_007731-T1
LLU|FUN_007732-T1
LLU|FUN_007733-T1
LLU|FUN_007734-T1ODD-SKIPPED - RELATED
LLU|FUN_007735-T1CYSTEINE PROTEASE FAMILY C1-RELATED
LLU|FUN_007736-T1
LLU|FUN_007737-T1CYSTEINE PROTEASE FAMILY C1-RELATED
LLU|FUN_007738-T1
LLU|FUN_007739-T1
LLU|FUN_007740-T1
LLU|FUN_007741-T1AUGMIN SUBUNIT 4 FAMILY MEMBER
LLU|FUN_007742-T1
LLU|FUN_007743-T1UBIQUITIN-ACTIVATING ENZYME E1
LLU|FUN_007744-T1
LLU|FUN_007745-T1D-AMINO ACID OXIDASE
LLU|FUN_007746-T1D-AMINO ACID OXIDASE
LLU|FUN_007747-T1
LLU|FUN_007748-T1
LLU|FUN_007749-T1D-AMINO ACID OXIDASE
LLU|FUN_007750-T1ATP-DEPENDENT RNA HELICASE
LLU|FUN_007751-T1ATP-DEPENDENT RNA HELICASE
LLU|FUN_007752-T1
LLU|FUN_007753-T1ATP-DEPENDENT RNA HELICASE
LLU|FUN_007754-T1
LLU|FUN_007755-T1
LLU|FUN_007756-T1MACROGLOBULIN / COMPLEMENT
LLU|FUN_007757-T1
LLU|FUN_007758-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
LLU|FUN_007759-T1
LLU|FUN_007760-T1
LLU|FUN_007761-T1
LLU|FUN_007762-T1SERINE PROTEASE INHIBITOR, SERPIN
LLU|FUN_007763-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_007764-T1
LLU|FUN_007765-T1
LLU|FUN_007766-T1
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