Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_007417-T1 | |
LLU|FUN_007418-T1 | |
LLU|FUN_007419-T1 | THAP DOMAIN PROTEIN |
LLU|FUN_007420-T1 | |
LLU|FUN_007421-T1 | |
LLU|FUN_007422-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_007423-T1 | |
LLU|FUN_007424-T1 | FACIOGENITAL DYSPLASIA PROTEIN |
LLU|FUN_007425-T1 | SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN |
LLU|FUN_007426-T1 | SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN |
LLU|FUN_007427-T1 | |
LLU|FUN_007428-T1 | |
LLU|FUN_007429-T1 | |
LLU|FUN_007430-T1 | WNT RELATED |
LLU|FUN_007431-T1 | WNT RELATED |
LLU|FUN_007432-T1 | |
LLU|FUN_007433-T1 | WNT RELATED |
LLU|FUN_007434-T1 | ANTIGEN BSP, PUTATIVE-RELATED |
LLU|FUN_007435-T1 | |
LLU|FUN_007436-T1 | |
LLU|FUN_007437-T1 | |
LLU|FUN_007438-T1 | RGD1565685 PROTEIN |
LLU|FUN_007439-T1 | |
LLU|FUN_007440-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_007441-T1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
LLU|FUN_007442-T1 | FRUCTOSE-2,6-BISPHOSPHATASE TIGAR |
LLU|FUN_007443-T1 | BIOTIN PROTEIN LIGASE |
LLU|FUN_007444-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 |
LLU|FUN_007445-T1 | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED |
LLU|FUN_007446-T1 | |
LLU|FUN_007447-T1 | |
LLU|FUN_007448-T1 | |
LLU|FUN_007449-T1 | |
LLU|FUN_007450-T1 | |
LLU|FUN_007451-T1 | |
LLU|FUN_007452-T1 | |
LLU|FUN_007453-T1 | |
LLU|FUN_007454-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_007455-T1 | ARYLSULFATASE |
LLU|FUN_007456-T1 | |
LLU|FUN_007457-T1 | ATP-DEPENDENT RNA HELICASE |
LLU|FUN_007458-T1 | SURFEIT LOCUS PROTEIN |
LLU|FUN_007459-T1 | ARYLSULFATASE |
LLU|FUN_007460-T1 | INTEGRATOR COMPLEX SUBUNIT 5 |
LLU|FUN_007461-T1 | TYROSINE-PROTEIN KINASE |
LLU|FUN_007462-T1 | - |
LLU|FUN_007463-T1 | MITOGUARDIN |
LLU|FUN_007464-T1 | TUBULIN POLYGLUTAMYLASE |
LLU|FUN_007465-T1 | |
LLU|FUN_007466-T1 | ARMADILLO-TYPE FOLD-RELATED |