About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07451AGGRECAN/VERSICAN PROTEOGLYCAN
HS07452TRANSMEMBRANE SUPERFAMILY 6 MEMBER 1/2
HS07453
HS07454MYOMEGALIN
HS074555'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT
HS07456SOLUTE CARRIER FAMILY 25
HS07457FAMILY WITH SEQUENCE SIMILARITY 102
HS07458UNCHARACTERIZED
HS07459FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 7
HS07460FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 7
HS07461LD33695P
HS07462NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG
HS07463UNCHARACTERIZED
HS07464TIR DOMAIN-CONTAINING ADAPTER MOLECULE 1
HS07465CALPAIN
HS07466EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED
HS07467PHOSPHOLIPID SCRAMBLASE-RELATED
HS07468NEUROTRANSMITTER GATED ION CHANNEL
HS07469ACROSIN-RELATED
HS07470VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B2-RELATED
HS07471NOT56 - RELATED
HS07472MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1
HS07473CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE II INHIBITOR 2
HS07474SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN
HS07475STOP PROTEIN
HS07476YEATS DOMAIN
HS07477KELCH PROTEIN
HS07478G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS07479CGI-12 PROTEIN-RELATED
HS07480MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS07481HYPERKINETIC, ISOFORM M
HS07482RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS07483MUSCLEBLIND-LIKE PROTEIN
HS07484CULLIN
HS07485DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 12
HS07486ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
HS07487SECRETOGRANIN II
HS07488LONG-CHAIN-FATTY-ACID--COA LIGASE
HS07489PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS07490APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
HS07491EPH RECEPTOR A5
HS07492GLYPICAN
HS07493GLYPICAN
HS07494NEURONAL TYROSINE-PHOSPHORYLATED PHOSPHOINOSITIDE-3-KINASE ADAPTER 2-RELATED
HS07495COLLAGEN ALPHA
HS07496COLLAGEN ALPHA
HS07497FIBROBLAST GROWTH FACTOR
HS07498RHOMBOID PROTEASE
HS07499SYNTHASE CPS1, PUTATIVE (AFU_ORTHOLOGUE AFUA_7G02500)-RELATED
HS075002,5-DIKETO-D-GLUCONIC ACID REDUCTASE
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