About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07301KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS07302TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN15
HS07303SIMILAR TO RIKEN CDNA 1700025G04 GENE
HS07304VESICLE-TRAFFICKING PROTEIN SEC22B
HS0730530S 40S RIBOSOMAL PROTEIN
HS07306NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
HS07307PROTEIN FAM78A
HS07308
HS07309NUCLEOTIDE KINASE
HS07310ZINC FINGER PROTEIN
HS07311CLAUDIN
HS07312SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS07313BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS07314CATION-TRANSPORTING ATPASE-RELATED
HS07315ATPASE E1
HS07316EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
HS07317SUGAR KINASE
HS07318SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT
HS07319G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
HS07320
HS07321DRONGO, ISOFORM F
HS07322FLAP ENDONUCLEASE FAMILY MEMBER
HS07323UNCHARACTERIZED
HS07324STERILE20-LIKE KINASE, ISOFORM B-RELATED
HS07325SOX TRANSCRIPTION FACTOR
HS07326CLAUDIN
HS07327HEPARAN SULFATE 2-O-SULFOTRANSFERASE
HS07328SERINE/THREONINE-PROTEIN KINASE
HS07329TRANSCRIPTION INITIATION FACTOR IIB-RELATED
HS07330-
HS07331A-KINASE ANCHOR PROTEIN AKAP 8
HS07332ZINC FINGER PROTEIN
HS07333HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG
HS07334HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG
HS07335OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
HS07336GLOMULIN
HS07337UNCHARACTERIZED
HS07338
HS07339
HS07340ODD-SKIPPED - RELATED
HS07341RIBOSOMAL PROTEIN L5-RELATED
HS07342UNCHARACTERIZED
HS07343POLYCOMB-LIKE TRANSCRIPTION FACTOR
HS07344SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO
HS07345INTEGRAL MEMBRANE PROTEIN GPR177
HS07346DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
HS07347NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
HS07348UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN
HS07349ATP-DEPENDENT DNA HELICASE
HS07350G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
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