About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07101APOLIPOPROTEIN D
HS07102POLYCOMB GROUP PROTEIN
HS07103TRANSLOCATION PROTEIN SEC62
HS07104NAD KINASE
HS07105G-PROTEIN COUPLED RECEPTOR 160-RELATED
HS07106SKI ONCOGENE-RELATED
HS07107RIBOSOMAL PROTEIN S6 KINASE
HS07108POLYCOMB GROUP PROTEIN
HS07109SERINE/THREONINE-PROTEIN KINASE 17
HS07110SIGNAL PEPTIDE PEPTIDASE
HS07111AGAP007712-PA
HS07112TYROSINE-PROTEIN KINASE RECEPTOR
HS07113MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
HS07114UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
HS07115-
HS07116LYSYL OXIDASE-LIKE-RELATED
HS07117BNIP - RELATED
HS07118URIDINE KINASE
HS07119B-BOX DOMAIN CONTAINING
HS07120ZINC FINGER PROTEIN
HS07121SODIUM/DICARBOXYLATE SYMPORTER-RELATED
HS07122HOMEOBOX PROTEIN, PUTATIVE-RELATED
HS07123CALRETICULIN AND CALNEXIN
HS07124EH DOMAIN
HS07125KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS07126AP COMPLEX SUBUNIT MU
HS07127TROPOMYOSIN
HS07128LD44762P
HS07129CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
HS07130RAN BINDING PROTEIN
HS07131GDNF SUBFAMILY OF TGF-BETA FAMILY
HS07132CYTOKINE RECEPTOR
HS07133OVOCHYMASE-RELATED
HS07134TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
HS07135TRANSMEMBRANE PROTEIN 59-LIKE PROTEIN
HS07136LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42
HS07137UNCHARACTERIZED
HS07138
HS07139UNCHARACTERIZED
HS07140WD REPEAT DOMAIN-CONTAINING FAMILY
HS07141PROTEIN VAV
HS07142
HS07143NETRIN/LAMININ-RELATED
HS07144ALPHA-AMYLASE
HS07145COLLAGEN ALPHA
HS07146OLFACTOMEDIN-RELATED
HS07147SPERMATHECAL PHYSIOLOGY VARIANT
HS07148TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
HS07149BETA/GAMMA CRYSTALLIN
HS07150
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