About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06901
HS06902B-BOX DOMAIN CONTAINING
HS06903B-BOX DOMAIN CONTAINING
HS06904
HS06905ENDONUCLEASE-RELATED
HS06906
HS06907B-BOX DOMAIN CONTAINING
HS06908B-BOX DOMAIN CONTAINING
HS06909B-BOX DOMAIN CONTAINING
HS06910REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06911ZINC FINGER PROTEIN ZIC AND GLI
HS06912ZINC FINGER PROTEIN ZIC AND GLI
HS06913REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06914ZINC FINGER PROTEIN ZIC AND GLI
HS06915B-BOX DOMAIN CONTAINING
HS06916ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS06917ZINC FINGER PROTEIN
HS06918REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06919REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06920B-BOX DOMAIN CONTAINING
HS06921GLUTAMATE SEMIALDEHYDE DEHYDROGENASE
HS06922CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
HS06923CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
HS06924ODD-SKIPPED - RELATED
HS06925HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS06926RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN
HS06927REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06928CENTROMERE PROTEIN E
HS06929SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS06930DNA POLYMERASE DELTA SUBUNIT 3
HS06931MULTICOPPER OXIDASE-RELATED
HS06932PIKACHURIN-LIKE PROTEIN
HS06933B-BOX DOMAIN CONTAINING
HS06934ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS06935
HS06936B-BOX DOMAIN CONTAINING
HS06937PERFORIN-1
HS06938
HS06939ZINC FINGER PROTEIN
HS06940ZINC FINGER PROTEIN
HS06941KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS06942B-BOX DOMAIN CONTAINING
HS06943
HS06944
HS06945PR DOMAIN ZINC FINGER PROTEIN
HS06946POL PROTEIN
HS06947ZINC FINGER PROTEIN
HS06948KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS06949KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS06950B-BOX DOMAIN CONTAINING
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