About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07001SUGAR NUCLEOTIDE EPIMERASE RELATED
HS07002CHEMOTACTIC RECEPTOR
HS07003NFAT
HS07004MYELOID-ASSOCIATED DIFFERENTIATION MARKER MYADM FAMILY MEMBER
HS07005BESTROPHIN
HS07006
HS07007WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER
HS07008CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER
HS07009ATP-DEPENDENT RNA HELICASE
HS07010ALANINE AMINOTRANSFERASE
HS07011UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
HS07012GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN
HS07013EXOSOME COMPLEX COMPONENT
HS07014CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
HS07015
HS07016ADHESION G-PROTEIN COUPLED RECEPTOR
HS07017PROTEIN KIAA0494
HS07018UNCHARACTERIZED
HS07019ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
HS07020
HS07021BETA-CAROTENE DIOXYGENASE
HS07022GEO07743P1
HS07023VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS07024LD33804P
HS07025COILED-COIL DOMAIN-CONTAINING PROTEIN 178
HS07026E3 UBIQUITIN-PROTEIN LIGASE KCMF1
HS07027MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
HS07028DNA REPAIR-SCAFFOLDING PROTEIN SPIDR
HS07029CCAAT/ENHANCER BINDING PROTEIN
HS07030DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
HS07031UBIQUITIN-CONJUGATING ENZYME E2
HS07032ZINC FINGER PROTEIN
HS07033SYNTROPHIN
HS07034PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
HS07035MYELIN TRANSCRIPTION FACTOR 1-RELATED
HS07036RB1-INDUCIBLE COILED-COIL
HS07037RB1-INDUCIBLE COILED-COIL
HS07038CENTAURIN-GAMMA-1A
HS07039HOMEOBOX PROTEIN GBX
HS07040ROLLING PEBBLES, ISOFORM B
HS07041HISTONE H2B
HS07042AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
HS07043CELL DIVISION PROTEIN KINASE
HS07044ATP-BINDING CASSETTE SUB-FAMILY B
HS07045APG9 AUTOPHAGY 9
HS07046SI:DKEY-31G6.6
HS07047SI:DKEY-31G6.6
HS07048SI:DKEY-31G6.6
HS07049GUANYLATE KINASE-RELATED
HS07050MULTIPLE MYELOMA TUMOR-ASSOCIATED PROTEIN 2 FAMILY MEMBER
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