About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07151RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS07152-
HS07153RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
HS07154AGAP005329-PA
HS071554.1 G PROTEIN
HS07156
HS07157
HS07158ZINC FINGER PROTEIN
HS07159ADENOMATOSIS POLYPOSIS COLI DOWN-REGULATED 1
HS07160VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN
HS07161RAS-RELATED PROTEIN RAB
HS07162RALA BINDING PROTEIN 1 RALBP1
HS07163TWISTED GASTRULATION PROTEIN HOMOLOG 1-A-RELATED
HS07164ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12
HS07165NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL
HS07166ACETYL-COENZYME A SYNTHETASE
HS07167UNCHARACTERIZED
HS07168SOLUBLE NSF ATTACHMENT PROTEIN SNAP
HS07169LD44762P
HS07170PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG
HS07171CYSTEINE PROTEASE FAMILY C1-RELATED
HS07172METALLO PHOSPHOESTERASE RELATED
HS07173GTP-BINDING PROTEIN ALPHA SUBUNIT
HS07174PAK1 INTERACTING PROTEIN 1
HS07175PLACENTAL PROTEIN 11-RELATED
HS07176UNCHARACTERIZED
HS07177ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN
HS07178TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER
HS07179ANTERIOR GRADIENT PROTEIN-RELATED
HS07180RGS-GAIP INTERACTING PROTEIN GIPC
HS07181DNAJ HOMOLOG SUBFAMILY C MEMBER
HS07182SOLUTE CARRIER FAMILY 25
HS07183KH DOMAIN CONTAINING RNA BINDING PROTEIN
HS07184MITOGUARDIN
HS07185UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS07186ZINC FINGER, ZZ DOMAIN CONTAINING 3
HS07187NUCLEOTIDE KINASE
HS07188GPI-ANCHOR TRANSAMIDASE
HS07189-
HS07190-
HS07191GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
HS07192MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
HS0719340S RIBOSOMAL PROTEIN S8
HS0719440S RIBOSOMAL PROTEIN S8
HS07195E3 UBIQUITIN-PROTEIN LIGASE HECTD3
HS07196SERINE/THREONINE-PROTEIN KINASE
HS07197FORKHEAD BOX PROTEIN
HS07198FORKHEAD BOX PROTEIN BINIOU
HS07199FORKHEAD BOX PROTEIN
HS07200INTERFERON REGULATORY FACTOR
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