Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_23804-10.5 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_23804-10.9 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Bpl_scaf_23804-2.5 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
| Bpl_scaf_23804-3.0 | MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED |
| Bpl_scaf_23804-6.11 | ENDO-1,4-BETA-GLUCANASE |
| Bpl_scaf_23804-6.21 | |
| Bpl_scaf_23804-6.26 | |
| Bpl_scaf_23804-7.5 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_23804-7.6 | LITHOSTATHINE |
| Bpl_scaf_23804-8.11 | |
| Bpl_scaf_23804-8.12 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_23804-9.3 | |
| Bpl_scaf_23804-9.7 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_23804-9.8 | OPSIN |
| Bpl_scaf_23805-0.3 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_23805-1.10 | POLYCOMB GROUP PROTEIN |
| Bpl_scaf_23805-1.11 | NETRIN/LAMININ-RELATED |
| Bpl_scaf_23805-10.10 | TNF RECEPTOR ASSOCIATED FACTOR |
| Bpl_scaf_23805-10.12 | |
| Bpl_scaf_23805-10.16 | CENTROMERE PROTEIN P |
| Bpl_scaf_23805-10.21 | |
| Bpl_scaf_23805-11.12 | PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4 |
| Bpl_scaf_23805-11.7 | PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4 |
| Bpl_scaf_23805-2.10 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_23805-2.14 | HL01030P-RELATED |
| Bpl_scaf_23805-2.17 | PROTEIN C9ORF135 |
| Bpl_scaf_23805-5.13 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| Bpl_scaf_23805-5.14 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| Bpl_scaf_23805-5.21 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| Bpl_scaf_23805-6.7 | PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN |
| Bpl_scaf_23805-6.8 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Bpl_scaf_23805-7.12 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Bpl_scaf_23805-7.13 | |
| Bpl_scaf_23805-7.19 | OS05G0310600 PROTEIN |
| Bpl_scaf_23805-7.21 | |
| Bpl_scaf_23805-8.6 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_23805-8.7 | |
| Bpl_scaf_23805-9.2 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Bpl_scaf_23805-9.4 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| Bpl_scaf_23816-0.1 | |
| Bpl_scaf_23816-0.10 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| Bpl_scaf_23816-0.12 | DYNEIN LIGHT CHAIN |
| Bpl_scaf_23816-0.13 | TNF RECEPTOR ASSOCIATED FACTOR |
| Bpl_scaf_23816-0.16 | DYNEIN LIGHT CHAIN |
| Bpl_scaf_23816-1.18 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_23816-1.4 | UNCHARACTERIZED |
| Bpl_scaf_23816-1.5 | TP53-REGULATED INHIBITOR OF APOPTOSIS 1 |
| Bpl_scaf_23816-2.15 | E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED |
| Bpl_scaf_23816-2.17 | E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATED |
| Bpl_scaf_23816-3.24 | DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1 |
