About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_23410-0.23
Bpl_scaf_23410-0.24
Bpl_scaf_23410-0.25
Bpl_scaf_23417-0.3ANKYRIN REPEAT DOMAIN 40
Bpl_scaf_23417-0.6DRAB11-RELATED
Bpl_scaf_23417-0.8RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE
Bpl_scaf_2342-0.1T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Bpl_scaf_2342-0.2
Bpl_scaf_2342-0.4ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_2342-0.5
Bpl_scaf_2342-1.10
Bpl_scaf_2342-1.9ENDONUCLEASE-RELATED
Bpl_scaf_23426-0.13RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Bpl_scaf_23426-0.15FLAP ENDONUCLEASE FAMILY MEMBER
Bpl_scaf_23426-0.16FLAP ENDONUCLEASE FAMILY MEMBER
Bpl_scaf_23426-0.17RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Bpl_scaf_23435-0.2
Bpl_scaf_23435-0.3AGAP008228-PA
Bpl_scaf_23435-0.5KU AUTOANTIGEN DNA HELICASE
Bpl_scaf_23439-0.18
Bpl_scaf_23439-0.20
Bpl_scaf_23439-0.23
Bpl_scaf_23446-0.5
Bpl_scaf_23446-0.7
Bpl_scaf_23464-0.1POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Bpl_scaf_23476-0.3
Bpl_scaf_23478-0.13TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_23478-0.17CADHERIN-23
Bpl_scaf_23478-0.18BEN DOMAIN-CONTAINING PROTEIN 3
Bpl_scaf_23478-0.21
Bpl_scaf_2348-0.1ANKYRIN REPEAT PROTEIN
Bpl_scaf_2348-0.4SH2B ADAPTER PROTEIN
Bpl_scaf_2348-1.15PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Bpl_scaf_2348-1.23RAB GTPASE-BINDING EFFECTOR PROTEIN
Bpl_scaf_2348-1.24RAB GTPASE-BINDING EFFECTOR PROTEIN
Bpl_scaf_2348-1.25
Bpl_scaf_23485-0.13DISCS LARGE
Bpl_scaf_23485-0.6
Bpl_scaf_23504-0.28GTPASE, IMAP FAMILY MEMBER-RELATED
Bpl_scaf_23504-0.7REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_23511-0.2
Bpl_scaf_23512-0.4EXPRESSED PROTEIN
Bpl_scaf_23512-0.6LD24721P
Bpl_scaf_23512-2.11
Bpl_scaf_23512-2.12MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
Bpl_scaf_23512-2.13MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
Bpl_scaf_23512-3.3
Bpl_scaf_23512-3.5PROSTAGLANDIN REDUCTASE
Bpl_scaf_23512-4.6
Bpl_scaf_23512-4.8
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