Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_23650-0.7 | |
| Bpl_scaf_23650-0.8 | |
| Bpl_scaf_23650-0.9 | FTP DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_23650-1.0 | |
| Bpl_scaf_23650-1.15 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_23650-1.38 | |
| Bpl_scaf_23650-1.39 | |
| Bpl_scaf_23650-1.5 | |
| Bpl_scaf_23658-0.3 | |
| Bpl_scaf_23658-0.5 | |
| Bpl_scaf_23665-0.5 | |
| Bpl_scaf_23665-1.1 | |
| Bpl_scaf_23665-1.4 | LAMGL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_23665-2.10 | RAW, ISOFORM A |
| Bpl_scaf_23665-2.12 | |
| Bpl_scaf_23665-2.14 | LAMGL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_23665-2.8 | |
| Bpl_scaf_23675-1.2 | FAS-ASSOCIATED PROTEIN |
| Bpl_scaf_23675-2.9 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT |
| Bpl_scaf_23676-0.3 | - |
| Bpl_scaf_23676-1.2 | TUBULIN POLYGLUTAMYLASE |
| Bpl_scaf_23676-2.0 | OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR |
| Bpl_scaf_23676-2.10 | |
| Bpl_scaf_23676-2.14 | CHROMOSOME 28 C12ORF29 HOMOLOG |
| Bpl_scaf_23676-2.15 | ATP-BINDING CASSETTE SUB-FAMILY B |
| Bpl_scaf_23676-4.7 | MULTICOPPER OXIDASE-RELATED |
| Bpl_scaf_23676-5.20 | ROPPORIN-1-LIKE PROTEIN |
| Bpl_scaf_23676-5.22 | PUTATIVE-RELATED |
| Bpl_scaf_23676-5.7 | HORMA DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_23676-6.2 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| Bpl_scaf_23676-7.14 | |
| Bpl_scaf_23676-7.2 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Bpl_scaf_23676-8.10 | AGAP004733-PA |
| Bpl_scaf_23676-8.11 | |
| Bpl_scaf_23676-8.9 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| Bpl_scaf_23676-9.8 | WASH COMPLEX SUBUNIT 4 |
| Bpl_scaf_23676-9.9 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
| Bpl_scaf_23677-0.0 | |
| Bpl_scaf_23677-0.4 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_23677-10.1 | |
| Bpl_scaf_23677-10.14 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| Bpl_scaf_23677-2.0 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Bpl_scaf_23677-3.1 | |
| Bpl_scaf_23677-3.3 | |
| Bpl_scaf_23677-4.4 | DOPAMINE BETA HYDROXYLASE RELATED |
| Bpl_scaf_23677-4.5 | ZGC:195170 |
| Bpl_scaf_23677-5.1 | |
| Bpl_scaf_23677-5.4 | |
| Bpl_scaf_23677-6.5 | NOTUM-RELATED |
| Bpl_scaf_23677-6.6 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
