Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_23677-7.6 | RUNT RELATED |
| Bpl_scaf_23677-8.3 | PROTEIN CBG19621 |
| Bpl_scaf_23677-9.2 | |
| Bpl_scaf_23677-9.8 | |
| Bpl_scaf_23680-0.4 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_23684-0.0 | |
| Bpl_scaf_23689-0.4 | |
| Bpl_scaf_23701-0.0 | OVOCHYMASE-RELATED |
| Bpl_scaf_23703-0.0 | OS10G0105400 PROTEIN |
| Bpl_scaf_23703-2.1 | |
| Bpl_scaf_23703-2.51 | OS10G0105400 PROTEIN |
| Bpl_scaf_23703-2.56 | COLLAGEN ALPHA |
| Bpl_scaf_23703-2.57 | COLLAGEN ALPHA |
| Bpl_scaf_23703-2.58 | |
| Bpl_scaf_23703-2.59 | OS10G0105400 PROTEIN |
| Bpl_scaf_23703-2.63 | |
| Bpl_scaf_23703-2.65 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_23703-2.66 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2372-0.3 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2372-1.6 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_2372-1.9 | CELL CYCLE CONTROL PROTEIN CWF25 |
| Bpl_scaf_2377-0.0 | |
| Bpl_scaf_23796-0.5 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_23796-0.9 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| Bpl_scaf_23797-0.4 | |
| Bpl_scaf_23798-0.13 | SI:CH211-266K2.1 |
| Bpl_scaf_23798-0.15 | |
| Bpl_scaf_23798-0.5 | PR DOMAIN ZINC FINGER PROTEIN |
| Bpl_scaf_23799-0.1 | |
| Bpl_scaf_23799-1.12 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
| Bpl_scaf_23799-1.13 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 8 |
| Bpl_scaf_23799-1.5 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_23799-1.8 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| Bpl_scaf_23799-2.10 | |
| Bpl_scaf_23799-2.18 | UNCHARACTERIZED |
| Bpl_scaf_23799-2.32 | DNAJ HOMOLOG SUBFAMILY C MEMBER |
| Bpl_scaf_23799-3.0 | |
| Bpl_scaf_23799-3.14 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEINS-INTERACTING PROTEIN 1 GADD45GIP1 |
| Bpl_scaf_23799-3.15 | DISCS LARGE |
| Bpl_scaf_23801-0.4 | OS05G0521000 PROTEIN |
| Bpl_scaf_23801-0.5 | SESQUIPEDALIAN |
| Bpl_scaf_23803-0.0 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
| Bpl_scaf_23804-0.8 | LD39211P |
| Bpl_scaf_23804-0.9 | KREMEN PROTEIN |
| Bpl_scaf_23804-1.2 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
| Bpl_scaf_23804-10.11 | SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED |
| Bpl_scaf_23804-10.15 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_23804-10.17 | |
| Bpl_scaf_23804-10.3 | |
| Bpl_scaf_23804-10.4 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
