Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_23306-0.5 | CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN |
| Bpl_scaf_23306-0.6 | ARRESTIN DOMAIN-CONTAINING PROTEIN D |
| Bpl_scaf_23307-2.1 | - |
| Bpl_scaf_23307-2.4 | PROTEIN PHOSPHATASE 2C |
| Bpl_scaf_23307-2.5 | POTE ANKYRIN DOMAIN |
| Bpl_scaf_23307-3.27 | |
| Bpl_scaf_23307-3.28 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| Bpl_scaf_23307-3.29 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_23307-4.100 | |
| Bpl_scaf_23307-4.12 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_23307-4.13 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_23307-4.17 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_23307-4.4 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_23307-4.52 | PROTEIN CBG03580 |
| Bpl_scaf_23307-4.96 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_23307-4.97 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_2331-0.10 | REPRESSOR OF YIELD OF DENV PROTEIN |
| Bpl_scaf_2331-0.15 | REPRESSOR OF YIELD OF DENV PROTEIN |
| Bpl_scaf_2331-0.4 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2331-0.5 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2331-1.11 | REPRESSOR OF YIELD OF DENV PROTEIN |
| Bpl_scaf_2331-1.12 | |
| Bpl_scaf_2331-1.13 | REPRESSOR OF YIELD OF DENV PROTEIN |
| Bpl_scaf_2331-1.15 | |
| Bpl_scaf_23326-0.7 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_23336-0.0 | |
| Bpl_scaf_23345-0.0 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Bpl_scaf_23345-0.1 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_23345-0.6 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Bpl_scaf_23346-0.1 | |
| Bpl_scaf_23346-0.5 | |
| Bpl_scaf_23346-0.8 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_23346-1.17 | CALCYPHOSIN |
| Bpl_scaf_23346-1.18 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_23346-1.3 | |
| Bpl_scaf_23346-2.5 | METHANETHIOL OXIDASE |
| Bpl_scaf_23346-3.23 | |
| Bpl_scaf_23346-3.7 | CULLIN |
| Bpl_scaf_23346-4.10 | THYMIDYLATE KINASE |
| Bpl_scaf_23346-4.7 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
| Bpl_scaf_23346-4.9 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
| Bpl_scaf_23346-5.13 | STIMULATOR OF INTERFERON GENES PROTEIN |
| Bpl_scaf_23346-5.16 | STIMULATOR OF INTERFERON GENES PROTEIN |
| Bpl_scaf_23359-0.3 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_23359-0.4 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_23382-0.6 | PROPERDIN |
| Bpl_scaf_23397-0.4 | M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25 |
| Bpl_scaf_23397-0.5 | G PROTEIN-COUPLED RECEPTOR |
| Bpl_scaf_23397-0.6 | UNCHARACTERIZED |
| Bpl_scaf_23397-0.9 | M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25 |
