Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_2315-1.24 | TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 |
| Bpl_scaf_23153-0.0 | UNCHARACTERIZED |
| Bpl_scaf_23153-0.4 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_23153-0.6 | LEUCOKININ RECEPTOR-RELATED |
| Bpl_scaf_23153-1.4 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| Bpl_scaf_23153-1.7 | |
| Bpl_scaf_23153-1.8 | |
| Bpl_scaf_23153-1.9 | |
| Bpl_scaf_23153-2.14 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| Bpl_scaf_23153-2.6 | |
| Bpl_scaf_23153-2.9 | NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT |
| Bpl_scaf_23153-3.1 | LEUCOKININ RECEPTOR-RELATED |
| Bpl_scaf_23153-3.3 | |
| Bpl_scaf_23153-5.3 | |
| Bpl_scaf_23153-5.7 | |
| Bpl_scaf_23153-6.4 | |
| Bpl_scaf_23153-6.6 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_23153-7.15 | UNCHARACTERIZED |
| Bpl_scaf_23153-7.16 | CARDIOLIPIN HYDROLASE |
| Bpl_scaf_23153-7.17 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| Bpl_scaf_23153-7.3 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| Bpl_scaf_23153-7.6 | TRYPSIN-RELATED |
| Bpl_scaf_23154-0.1 | |
| Bpl_scaf_23154-0.5 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_23154-1.5 | LP21163P |
| Bpl_scaf_23154-2.10 | VACUOLAR IMPORT AND DEGRADATION PROTEIN 24 |
| Bpl_scaf_23154-2.11 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| Bpl_scaf_23154-2.16 | |
| Bpl_scaf_23154-2.17 | DNAJ HOMOLOG SUBFAMILY C MEMBER 12 |
| Bpl_scaf_23154-3.10 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_23154-3.11 | VHS DOMAIN CONTAINING PROTEIN FAMILY |
| Bpl_scaf_23154-3.15 | ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR |
| Bpl_scaf_23154-3.31 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED |
| Bpl_scaf_23154-3.32 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| Bpl_scaf_23154-4.10 | FAM13 |
| Bpl_scaf_23154-4.12 | AMSH-LIKE PROTEASE |
| Bpl_scaf_23154-4.15 | CALPAIN |
| Bpl_scaf_23154-4.6 | CALPAIN |
| Bpl_scaf_23156-0.0 | |
| Bpl_scaf_23158-0.0 | |
| Bpl_scaf_23160-0.5 | DESMOGLEIN FAMILY MEMBER |
| Bpl_scaf_23162-0.0 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| Bpl_scaf_23165-1.16 | CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL |
| Bpl_scaf_23165-1.17 | |
| Bpl_scaf_23165-1.18 | |
| Bpl_scaf_23165-1.8 | BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN |
| Bpl_scaf_23165-2.2 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_23165-3.10 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| Bpl_scaf_23165-3.5 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Bpl_scaf_23165-3.8 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
