Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_23287-1.3 | LD44762P |
| Bpl_scaf_23287-1.8 | MITOGEN-ACTIVATED PROTEIN KINASE |
| Bpl_scaf_23287-11.5 | RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT |
| Bpl_scaf_23287-11.6 | RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT |
| Bpl_scaf_23287-12.1 | RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT |
| Bpl_scaf_23287-2.15 | DNA-REPAIR PROTEIN XRCC1 |
| Bpl_scaf_23287-2.17 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E |
| Bpl_scaf_23287-2.18 | GLUTAREDOXIN |
| Bpl_scaf_23287-2.27 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
| Bpl_scaf_23287-2.30 | UNCHARACTERIZED |
| Bpl_scaf_23287-3.0 | |
| Bpl_scaf_23287-3.4 | NEUROHYPOPHYSIAL HORMONES, N-TERMINAL DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_23287-3.7 | AMINOPEPTIDASE O |
| Bpl_scaf_23287-4.20 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_23287-5.0 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_23287-5.5 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_23287-6.14 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
| Bpl_scaf_23287-6.15 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Bpl_scaf_23287-6.17 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Bpl_scaf_23287-6.7 | UNCHARACTERIZED |
| Bpl_scaf_23287-6.8 | NUCLEOTIDE KINASE |
| Bpl_scaf_23287-7.31 | ALDO/KETO REDUCTASE |
| Bpl_scaf_23287-7.5 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_23287-8.1 | |
| Bpl_scaf_23287-8.2 | |
| Bpl_scaf_23287-9.3 | |
| Bpl_scaf_23287-9.4 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
| Bpl_scaf_23288-0.2 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_23288-0.6 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_23288-1.4 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Bpl_scaf_23288-1.5 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Bpl_scaf_23288-1.8 | NURIM |
| Bpl_scaf_23288-10.9 | PROTEIN TORNADO 1 |
| Bpl_scaf_23288-12.10 | MIP08469P |
| Bpl_scaf_23288-12.11 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| Bpl_scaf_23288-12.12 | CARNOSINE SYNTHASE 1 |
| Bpl_scaf_23288-12.5 | |
| Bpl_scaf_23288-12.8 | |
| Bpl_scaf_23288-2.5 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_23288-2.6 | DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN |
| Bpl_scaf_23288-2.7 | CYSTEINYL-TRNA SYNTHETASE |
| Bpl_scaf_23288-3.2 | DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN |
| Bpl_scaf_23288-4.3 | |
| Bpl_scaf_23288-4.5 | |
| Bpl_scaf_23288-5.0 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_23288-7.0 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_23288-8.7 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_23294-0.9 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_23300-0.14 | CEREBELLIN-RELATED |
| Bpl_scaf_23300-0.4 | CEREBELLIN-RELATED |
