About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_20675-2.12SCP160
Bpl_scaf_20675-2.13E3 UBIQUITIN-PROTEIN LIGASE MIB2
Bpl_scaf_20676-0.0
Bpl_scaf_20679-0.0
Bpl_scaf_20685-0.2
Bpl_scaf_20685-1.11PDZ AND LIM DOMAIN PROTEIN ZASP
Bpl_scaf_20685-2.19
Bpl_scaf_20685-2.20
Bpl_scaf_20685-2.21
Bpl_scaf_20685-2.5
Bpl_scaf_20685-2.7
Bpl_scaf_20844-0.0
Bpl_scaf_20844-0.2
Bpl_scaf_20844-0.4
Bpl_scaf_20844-0.7VACUOLAR PROTEIN SORTING VPS41
Bpl_scaf_20845-0.4BETA-MANNOSIDASE
Bpl_scaf_20846-0.10ARGININE/SERINE RICH SPLICING FACTOR SF4/14
Bpl_scaf_20846-0.30DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS
Bpl_scaf_20846-0.7HISTONE H2A
Bpl_scaf_20847-1.12E3 UBIQUITIN-PROTEIN LIGASE TRIP12
Bpl_scaf_20847-1.13NUCLEAR EXPORT MEDIATOR FACTOR NEMF
Bpl_scaf_20847-2.5ALPHA-MANNOSIDASE
Bpl_scaf_20847-2.6ALPHA-MANNOSIDASE
Bpl_scaf_20847-2.7UNCHARACTERIZED
Bpl_scaf_20847-3.6CELL DIVISION PROTEIN KINASE
Bpl_scaf_20847-3.7VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Bpl_scaf_20847-4.15
Bpl_scaf_20847-4.17CITRATE LYASE SUBUNIT BETA-RELATED
Bpl_scaf_20847-4.18FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100
Bpl_scaf_20847-4.19VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Bpl_scaf_20847-5.14DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
Bpl_scaf_20847-5.17PROTEIN TFG
Bpl_scaf_20847-5.18
Bpl_scaf_20847-5.8COPPER AMINE OXIDASE
Bpl_scaf_20855-0.0
Bpl_scaf_20858-0.10SCHLAFEN
Bpl_scaf_20858-0.7SI:CH211-108C17.2-RELATED-RELATED
Bpl_scaf_20858-0.9YALI0E30327P
Bpl_scaf_20858-1.13
Bpl_scaf_20858-1.9
Bpl_scaf_20858-2.6DUAL SPECIFICITY PROTEIN PHOSPHATASE 19
Bpl_scaf_20858-3.11
Bpl_scaf_20858-3.20POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP
Bpl_scaf_20858-3.22POS9-ACTIVATING FACTOR FAP7-RELATED
Bpl_scaf_20858-3.7PROTEASOME SUBUNIT ALPHA/BETA
Bpl_scaf_20859-0.7CEREBELLIN-RELATED
Bpl_scaf_20859-0.8TEMPTIN
Bpl_scaf_20861-0.3
Bpl_scaf_20863-0.4
Bpl_scaf_20864-0.2
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