Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_21041-0.12 | |
| Bpl_scaf_21041-0.7 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_21050-0.0 | |
| Bpl_scaf_21073-0.3 | |
| Bpl_scaf_21082-0.8 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Bpl_scaf_21082-0.9 | |
| Bpl_scaf_21087-0.0 | |
| Bpl_scaf_21087-0.4 | PUTATIVE-RELATED |
| Bpl_scaf_21095-0.6 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_21095-0.7 | WD REPEAT-CONTAINING PROTEIN 97 |
| Bpl_scaf_21105-0.5 | DNA PRIMASE LARGE SUBUNIT |
| Bpl_scaf_2111-0.4 | L-THREONINE 3-DEHYDROGENASE |
| Bpl_scaf_21125-0.0 | |
| Bpl_scaf_21125-0.12 | |
| Bpl_scaf_21125-0.13 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_21125-0.3 | |
| Bpl_scaf_21142-0.0 | HELIX LOOP HELIX PROTEIN 21-RELATED |
| Bpl_scaf_21142-0.15 | |
| Bpl_scaf_21142-0.3 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_21159-0.0 | |
| Bpl_scaf_21160-0.5 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
| Bpl_scaf_21160-0.6 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 5 |
| Bpl_scaf_21160-1.3 | SPINSTER |
| Bpl_scaf_21160-2.11 | RAS GTPASE-ACTIVATING PROTEINS |
| Bpl_scaf_21160-3.0 | |
| Bpl_scaf_21160-3.12 | G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP |
| Bpl_scaf_21160-3.13 | G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP |
| Bpl_scaf_21160-3.6 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13 |
| Bpl_scaf_21160-4.15 | NFATC2-INTERACTING PROTEIN |
| Bpl_scaf_21160-4.23 | |
| Bpl_scaf_21160-4.26 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_21160-4.7 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Bpl_scaf_21160-5.10 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_21160-5.2 | |
| Bpl_scaf_21160-5.25 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_21160-5.3 | |
| Bpl_scaf_21161-0.11 | CYTOKINESIS PROTEIN 3 |
| Bpl_scaf_21161-0.23 | |
| Bpl_scaf_21172-0.0 | |
| Bpl_scaf_21172-0.12 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Bpl_scaf_21173-0.0 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_21173-0.1 | |
| Bpl_scaf_21173-0.6 | |
| Bpl_scaf_21173-1.13 | ARGINASE/AGMATINASE |
| Bpl_scaf_21173-2.10 | DNA REPAIR PROTEIN XRCC3 |
| Bpl_scaf_21173-2.11 | 30S RIBOSOMAL PROTEIN S1 |
| Bpl_scaf_21173-2.12 | RAB3-GAP REGULATORY DOMAIN |
| Bpl_scaf_21173-3.0 | |
| Bpl_scaf_21173-5.2 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_21173-5.3 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
