Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_21283-0.38 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Bpl_scaf_21288-0.11 | UNCHARACTERIZED |
| Bpl_scaf_21288-0.6 | COILED-COIL DOMAIN-CONTAINING PROTEIN 115 |
| Bpl_scaf_21288-0.9 | F-BOX ONLY PROTEIN 42 |
| Bpl_scaf_21297-0.11 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_21297-0.13 | EXOCYST COMPLEX COMPONENT SEC6-RELATED |
| Bpl_scaf_21297-0.18 | |
| Bpl_scaf_21298-0.0 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Bpl_scaf_21298-0.17 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| Bpl_scaf_21298-0.5 | |
| Bpl_scaf_21298-1.10 | |
| Bpl_scaf_21298-1.12 | |
| Bpl_scaf_21298-1.15 | |
| Bpl_scaf_21298-1.19 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Bpl_scaf_21298-1.9 | |
| Bpl_scaf_21298-2.0 | |
| Bpl_scaf_21298-2.11 | |
| Bpl_scaf_21298-2.12 | |
| Bpl_scaf_21298-3.11 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_21298-3.16 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_21298-3.17 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_21298-3.9 | CEREBELLIN-RELATED |
| Bpl_scaf_21298-4.1 | |
| Bpl_scaf_21298-5.30 | ZINC FINGER PROTEIN 142 |
| Bpl_scaf_21298-5.9 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_21298-6.10 | IP01015P-RELATED |
| Bpl_scaf_21298-6.11 | PLASMINOGEN-RELATED |
| Bpl_scaf_21298-6.6 | |
| Bpl_scaf_21298-6.7 | |
| Bpl_scaf_21298-6.9 | ZINC FINGER PROTEIN 200 |
| Bpl_scaf_21298-7.0 | |
| Bpl_scaf_21302-0.0 | |
| Bpl_scaf_21302-0.2 | |
| Bpl_scaf_21302-0.24 | ARGININE OR CREATINE KINASE |
| Bpl_scaf_21302-0.26 | GLUTAMINE-TRNA LIGASE |
| Bpl_scaf_21302-0.28 | GLUTAMINE-TRNA LIGASE |
| Bpl_scaf_21302-0.29 | |
| Bpl_scaf_21302-0.30 | THAP DOMAIN-CONTAINING |
| Bpl_scaf_21302-0.8 | DNAJ HOMOLOG SUBFAMILY C MEMBER 24 |
| Bpl_scaf_21317-0.6 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 |
| Bpl_scaf_21317-0.7 | |
| Bpl_scaf_21317-1.7 | |
| Bpl_scaf_21317-1.8 | ACTIN FILAMENT-ASSOCIATED PROTEIN 1 FAMILY MEMBER |
| Bpl_scaf_21330-0.5 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_21330-1.1 | |
| Bpl_scaf_21330-1.2 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_21330-1.5 | |
| Bpl_scaf_21344-0.11 | |
| Bpl_scaf_21344-0.9 | |
| Bpl_scaf_21344-1.6 |
