About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_20441-0.2
Bpl_scaf_20441-0.6
Bpl_scaf_20448-0.11
Bpl_scaf_20448-0.3
Bpl_scaf_20454-0.11
Bpl_scaf_20454-0.17CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_20454-0.18
Bpl_scaf_20454-0.19CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_20454-0.8
Bpl_scaf_20454-0.9
Bpl_scaf_20468-0.26
Bpl_scaf_20468-0.28
Bpl_scaf_20468-0.34
Bpl_scaf_20468-0.36TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Bpl_scaf_20468-0.37
Bpl_scaf_20486-0.16PAPILLOMAVIRUS REGULATORY FACTOR PRF-1
Bpl_scaf_20486-0.17PLACENTAL PROTEIN 11-RELATED
Bpl_scaf_20486-0.6FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED
Bpl_scaf_20486-0.7
Bpl_scaf_20496-0.14CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
Bpl_scaf_20496-0.15
Bpl_scaf_2051-0.10
Bpl_scaf_2051-0.11SCAVENGER RECEPTOR CLASS F
Bpl_scaf_20513-0.12GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
Bpl_scaf_20513-0.47GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
Bpl_scaf_20513-0.48SERINE PROTEASE FAMILY S1C HTRA-RELATED
Bpl_scaf_20513-0.49
Bpl_scaf_20513-0.50SI:CH211-262H13.3-RELATED-RELATED
Bpl_scaf_2052-0.3IONOTROPIC GLUTAMATE RECEPTOR
Bpl_scaf_20520-1.11
Bpl_scaf_20520-1.12
Bpl_scaf_20520-1.13
Bpl_scaf_20520-1.15FATTY ACID SYNTHASE
Bpl_scaf_20520-1.19PDZ DOMAIN CONTAINING PROTEIN
Bpl_scaf_20520-1.22FATTY ACID SYNTHASE
Bpl_scaf_20520-1.23FATTY ACID SYNTHASE
Bpl_scaf_20520-1.33N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Bpl_scaf_20520-1.34N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Bpl_scaf_20520-1.35N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Bpl_scaf_20535-0.11KINESIN-LIKE PROTEIN KLP-3
Bpl_scaf_20535-0.12
Bpl_scaf_20535-1.5PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_20535-1.7
Bpl_scaf_20548-0.7
Bpl_scaf_20548-1.11VERTNIN
Bpl_scaf_20548-1.12
Bpl_scaf_20548-1.8
Bpl_scaf_20561-0.0
Bpl_scaf_20561-0.2
Bpl_scaf_20561-1.0
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