Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_19920-0.16 | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER |
| Bpl_scaf_19920-1.0 | CALCIUM-DEPENDENT SECRETION ACTIVATOR |
| Bpl_scaf_19920-2.15 | ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2 |
| Bpl_scaf_19920-2.18 | CALCIUM-DEPENDENT SECRETION ACTIVATOR |
| Bpl_scaf_19920-2.29 | 26S PROTESOME SUBUNIT 6 |
| Bpl_scaf_19931-0.11 | |
| Bpl_scaf_19931-0.3 | |
| Bpl_scaf_19931-0.8 | |
| Bpl_scaf_19931-2.22 | CALCIUM BINDING PROTEINS |
| Bpl_scaf_19931-2.23 | ZINC FINGER PROTEIN |
| Bpl_scaf_19931-2.6 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_19931-2.7 | LIN-24 (TWENTY-FOUR) LIKE |
| Bpl_scaf_19942-0.0 | |
| Bpl_scaf_19959-0.11 | |
| Bpl_scaf_19959-0.14 | |
| Bpl_scaf_19959-0.15 | |
| Bpl_scaf_19959-0.16 | |
| Bpl_scaf_19959-0.6 | |
| Bpl_scaf_19959-1.7 | FI04643P-RELATED |
| Bpl_scaf_19959-1.9 | |
| Bpl_scaf_19959-2.10 | |
| Bpl_scaf_19959-2.11 | |
| Bpl_scaf_19959-2.13 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Bpl_scaf_19959-2.6 | |
| Bpl_scaf_19959-2.9 | RAS-LIKE FAMILY MEMBER 11 |
| Bpl_scaf_19968-0.3 | |
| Bpl_scaf_19969-0.0 | |
| Bpl_scaf_19969-0.58 | TUBULIN |
| Bpl_scaf_19969-0.59 | ZINC ION BINDING PROTEIN |
| Bpl_scaf_19969-0.60 | TUBULIN |
| Bpl_scaf_19969-1.6 | D-ALANYL-D-ALANINE CARBOXYPEPTIDASE |
| Bpl_scaf_19969-1.7 | WD-REPEAT PROTEIN |
| Bpl_scaf_19969-2.17 | STATHMIN |
| Bpl_scaf_19969-2.21 | GLUTATHIONE S-TRANSFERASE |
| Bpl_scaf_19969-2.22 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| Bpl_scaf_19969-2.24 | MITOCHONDRIAL INNER MEMBRANE PROTEASE |
| Bpl_scaf_19969-2.25 | GLUTATHIONE S-TRANSFERASE |
| Bpl_scaf_19969-2.40 | |
| Bpl_scaf_19969-2.41 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
| Bpl_scaf_19969-2.47 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2-0.3 | |
| Bpl_scaf_2005-0.0 | |
| Bpl_scaf_20062-0.4 | PROTEASOME MATURATION PROTEIN UMP1 |
| Bpl_scaf_20062-0.5 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| Bpl_scaf_20062-0.6 | TRYPSIN-RELATED |
| Bpl_scaf_20062-1.2 | |
| Bpl_scaf_20062-2.14 | |
| Bpl_scaf_20062-2.15 | TRANSMEMBRANE PROTEIN 144 |
| Bpl_scaf_20062-2.22 | SI:DKEY-19B23.12-RELATED |
| Bpl_scaf_20063-1.10 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
