About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_19778-0.31ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_19778-0.32
Bpl_scaf_19791-0.18ELONGATION FACTOR TU-RELATED
Bpl_scaf_19791-0.20DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2
Bpl_scaf_19791-0.47FASCIN
Bpl_scaf_19791-0.49CGTHBA PROTEIN -14 GENE PROTEIN
Bpl_scaf_19791-0.50RNA DEMETHYLASE ALKBH5
Bpl_scaf_19791-0.51CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED
Bpl_scaf_19791-0.53DNA-3-METHYLADENINE GLYCOSYLASE
Bpl_scaf_19797-0.10
Bpl_scaf_19797-0.5OVOCHYMASE-RELATED
Bpl_scaf_19797-0.7DOCKING PROTEIN RELATED
Bpl_scaf_19807-0.14D-DOPACHROME DECARBOXYLASE
Bpl_scaf_19807-0.17
Bpl_scaf_19807-0.6
Bpl_scaf_19807-0.9BEN DOMAIN-CONTAINING PROTEIN 3
Bpl_scaf_19814-0.23
Bpl_scaf_19814-0.27NEPHRIN
Bpl_scaf_19814-0.28IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_19814-0.29IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_19814-0.5
Bpl_scaf_19824-0.14-
Bpl_scaf_19824-0.15NUCLEOLAR PROTEIN 9
Bpl_scaf_19825-0.1CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_19825-0.3
Bpl_scaf_19835-0.12OS10G0105400 PROTEIN
Bpl_scaf_19844-1.2CORONIN
Bpl_scaf_19850-0.0
Bpl_scaf_19850-0.11SI:CH211-189E2.2
Bpl_scaf_19850-0.12THREE PRIME REPAIR EXONUCLEASE 1, 2
Bpl_scaf_19850-0.28
Bpl_scaf_19850-1.13
Bpl_scaf_19864-0.10FOS TRANSCRIPTION FACTOR-RELATED
Bpl_scaf_19864-0.11F-BOX ONLY PROTEIN 48-RELATED
Bpl_scaf_19864-0.12FOS TRANSCRIPTION FACTOR-RELATED
Bpl_scaf_19864-0.9
Bpl_scaf_19864-1.25HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Bpl_scaf_19864-1.3CYSTATHIONINE BETA-SYNTHASE
Bpl_scaf_19864-1.7-
Bpl_scaf_19874-0.11
Bpl_scaf_19874-0.17POLYCYSTIN-1
Bpl_scaf_19874-0.18POLYCYSTIN FAMILY MEMBER
Bpl_scaf_19874-1.15LD33804P
Bpl_scaf_19874-1.16IMPORTIN-7, 8, 11
Bpl_scaf_19874-1.17BEN DOMAIN-CONTAINING PROTEIN 3
Bpl_scaf_19874-1.20PHD FINGER PROTEINS
Bpl_scaf_19878-0.0
Bpl_scaf_19882-0.3
Bpl_scaf_19884-1.5T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
Bpl_scaf_1989-0.0
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