About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_20231-4.16OVOCHYMASE-RELATED
Bpl_scaf_20258-0.8DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE
Bpl_scaf_2027-0.3
Bpl_scaf_20285-0.4INNEXIN
Bpl_scaf_20285-0.8ARMADILLO SEGMENT POLARITY PROTEIN
Bpl_scaf_20311-0.0
Bpl_scaf_20311-0.10
Bpl_scaf_20311-0.9
Bpl_scaf_20324-0.3
Bpl_scaf_20330-0.6
Bpl_scaf_20338-0.1PROTEIN EVA-1
Bpl_scaf_20338-0.10
Bpl_scaf_20338-0.2PROTEIN EVA-1
Bpl_scaf_20339-1.10RAS LIKE FAMILY 10 MEMBER B-RELATED
Bpl_scaf_20339-1.11ACYL-COA DEHYDROGENASE
Bpl_scaf_20339-1.14TRANSCRIPTION ELONGATION FACTOR SPT6
Bpl_scaf_20339-1.6
Bpl_scaf_20339-2.2MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_20339-2.6SARM1
Bpl_scaf_20339-3.1PROTEIN STAR
Bpl_scaf_20339-3.10L-ASPARTATE DEHYDROGENASE-RELATED
Bpl_scaf_20339-3.16BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Bpl_scaf_20345-0.22
Bpl_scaf_20345-0.24ALPHA-TECTORIN-RELATED
Bpl_scaf_20345-0.3BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Bpl_scaf_2036-0.3
Bpl_scaf_20374-0.10SEMAPHORIN
Bpl_scaf_20375-0.1
Bpl_scaf_20375-0.4
Bpl_scaf_20375-1.7L1 TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_20375-3.11IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_20375-3.12
Bpl_scaf_20375-4.1
Bpl_scaf_20375-4.3IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_20375-5.20
Bpl_scaf_20375-5.22RAB11-BINDING PROTEIN RELCH
Bpl_scaf_20375-5.23DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
Bpl_scaf_20375-5.24DNA REPLICATION FACTOR CDT1
Bpl_scaf_20375-5.25
Bpl_scaf_20375-5.66OUT AT FIRST
Bpl_scaf_20376-0.11TRANSMEMBRANE INNER EAR EXPRESSED PROTEIN
Bpl_scaf_20376-0.5BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
Bpl_scaf_20376-1.10
Bpl_scaf_20376-1.6
Bpl_scaf_20376-10.10
Bpl_scaf_20376-10.14
Bpl_scaf_20376-10.22
Bpl_scaf_20376-10.5
Bpl_scaf_20376-10.6
Bpl_scaf_20376-10.9
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