The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides58577 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| Paelopatides58578 | POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED |
| Paelopatides58579 | POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED |
| Paelopatides58580 | PROMININ PROM PROTEIN |
| Paelopatides58581 | DNA POLYMERASE CATALYTIC SUBUNIT |
| Paelopatides58582 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides58584 | RNA BINDING PROTEIN |
| Paelopatides58585 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Paelopatides58586 | |
| Paelopatides58587 | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED |
| Paelopatides58588 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides58589 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides58590 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides58591 | PROTEIN CBG26694 |
| Paelopatides58592 | TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides58593 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
| Paelopatides58594 | |
| Paelopatides58595 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Paelopatides58596 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides58597 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides58598 | |
| Paelopatides58599 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Paelopatides58600 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides58601 | |
| Paelopatides58602 | |
| Paelopatides58603 | PEPTIDASE S8 |
| Paelopatides58604 | COILED-COIL DOMAIN-CONTAINING PROTEIN 181 |
| Paelopatides58605 | SPINAL CORD EXPRESSION PROTEIN 4 |
| Paelopatides58606 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| Paelopatides58607 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides58608 | PROTEIN CBG26694 |
| Paelopatides58609 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides58610 | |
| Paelopatides58611 | |
| Paelopatides58612 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides58613 | SLR5058 PROTEIN |
| Paelopatides58614 | |
| Paelopatides58615 | NETRIN RECEPTOR UNC5 |
| Paelopatides58616 | |
| Paelopatides58617 | |
| Paelopatides58618 | NACHT DOMAIN-CONTAINING PROTEIN |
| Paelopatides58619 | |
| Paelopatides58620 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Paelopatides58621 | |
| Paelopatides58623 | |
| Paelopatides58624 | TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides58625 | |
| Paelopatides58626 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
| Paelopatides58627 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
| Paelopatides58628 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
