The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides58523 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides58524 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides58525 | S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM |
| Paelopatides58526 | S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM |
| Paelopatides58527 | REVERSE TRANSCRIPTASES |
| Paelopatides58528 | CHLORIDE CHANNEL CLIC-LIKE PROTEIN 1 |
| Paelopatides58529 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides58530 | MONOCARBOXYLATE TRANSPORTER |
| Paelopatides58531 | |
| Paelopatides58534 | GABA-B RECEPTOR |
| Paelopatides58535 | CYTOCHROME P450 FAMILY 4 |
| Paelopatides58536 | HEPARAN SULFATE SULFOTRANSFERASE |
| Paelopatides58537 | HEPARAN SULFATE SULFOTRANSFERASE |
| Paelopatides58538 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides58539 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides58540 | ENDONUCLEASE-RELATED |
| Paelopatides58541 | PROTEIN CBG26694 |
| Paelopatides58542 | PROTEIN CBG26694 |
| Paelopatides58543 | |
| Paelopatides58544 | TRANSPOSON |
| Paelopatides58545 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Paelopatides58546 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Paelopatides58547 | TYROSINE-PROTEIN KINASE |
| Paelopatides58548 | |
| Paelopatides58549 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Paelopatides58550 | |
| Paelopatides58551 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides58552 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides58553 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides58554 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Paelopatides58555 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides58556 | |
| Paelopatides58557 | NEURAL PROLIFERATION DIFFERENTIATION AND CONTROL PROTEIN-1 NPDC-1 PROTEIN |
| Paelopatides58558 | NEURAL PROLIFERATION DIFFERENTIATION AND CONTROL PROTEIN-1 NPDC-1 PROTEIN |
| Paelopatides58559 | PNAS-3 RELATED |
| Paelopatides58562 | |
| Paelopatides58563 | ACETYL-COA C-ACYLTRANSFERASE |
| Paelopatides58564 | TRIFUNCTIONAL ENZYME SUBUNIT ALPHA |
| Paelopatides58565 | BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED |
| Paelopatides58566 | - |
| Paelopatides58567 | PROTEIN CBG26694 |
| Paelopatides58568 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| Paelopatides58569 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides58570 | |
| Paelopatides58571 | PROTEIN CBG26694 |
| Paelopatides58572 | PROTEIN CBG26694 |
| Paelopatides58573 | NUCLEAR HORMONE RECEPTOR |
| Paelopatides58574 | LD27203P-RELATED |
| Paelopatides58575 | LD27203P-RELATED |
| Paelopatides58576 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
