The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides55051 | |
| Paelopatides55052 | NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1 |
| Paelopatides55053 | ENDO-ALPHA-1,2-MANNOSIDASE |
| Paelopatides55054 | ARGINYL-TRNA SYNTHETASE |
| Paelopatides55055 | NEPHRIN |
| Paelopatides55056 | |
| Paelopatides55057 | SI:CH211-196P9.1-RELATED |
| Paelopatides55058 | IP13529P |
| Paelopatides55059 | |
| Paelopatides55060 | INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS |
| Paelopatides55061 | ANKYRIN REPEAT PROTEIN |
| Paelopatides55062 | |
| Paelopatides55063 | |
| Paelopatides55064 | |
| Paelopatides55065 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides55066 | HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY |
| Paelopatides55067 | E3 UFM1-PROTEIN LIGASE 1 |
| Paelopatides55068 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55069 | |
| Paelopatides55070 | E3 UFM1-PROTEIN LIGASE 1 |
| Paelopatides55071 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| Paelopatides55072 | PROTEIN CBG26694 |
| Paelopatides55073 | CYTOCHROME P450 FAMILY 4 |
| Paelopatides55074 | |
| Paelopatides55075 | |
| Paelopatides55076 | PROTEIN CBG26694 |
| Paelopatides55077 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55078 | ENDONUCLEASE-RELATED |
| Paelopatides55079 | SUPEROXIDE DISMUTASE 2 |
| Paelopatides55080 | WILMS' TUMOR 1-ASSOCIATING PROTEIN |
| Paelopatides55081 | |
| Paelopatides55082 | CALCIPRESSIN |
| Paelopatides55083 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55084 | GH3 DOMAIN-CONTAINING PROTEIN |
| Paelopatides55085 | |
| Paelopatides55086 | |
| Paelopatides55087 | LITHOSTATHINE |
| Paelopatides55088 | |
| Paelopatides55089 | |
| Paelopatides55090 | FUKUTIN-RELATED |
| Paelopatides55091 | |
| Paelopatides55092 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides55093 | D-AMINO ACID OXIDASE |
| Paelopatides55094 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Paelopatides55095 | |
| Paelopatides55096 | NACHT DOMAIN-CONTAINING PROTEIN |
| Paelopatides55097 | NETRIN RECEPTOR UNC5 |
| Paelopatides55098 | |
| Paelopatides55099 | |
| Paelopatides55100 |
