About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54539CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54540CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54543AN1-TYPE ZINC FINGER PROTEIN
Paelopatides54544
Paelopatides54545FI02073P
Paelopatides54546REVERSE TRANSCRIPTASE
Paelopatides54547
Paelopatides54548
Paelopatides54549G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
Paelopatides54550IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides54551ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54552
Paelopatides54553
Paelopatides545542-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE
Paelopatides54555
Paelopatides54556
Paelopatides54557BONUS, ISOFORM C-RELATED
Paelopatides54558BILIVERDIN REDUCTASE A
Paelopatides54559BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Paelopatides54560TRANSMEMBRANE PROTEIN 199
Paelopatides54561VITAMIN K EPOXIDE REDUCTASE COMPLEX, SUBUNIT 1
Paelopatides54562OROTATE PHOSPHORIBOSYLTRANSFERASE
Paelopatides54563TUBULIN POLYGLUTAMYLASE
Paelopatides54564TRAF-LIKE SUPERFAMILY PROTEIN
Paelopatides54565RIBOPHORIN I
Paelopatides54566ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54567ENDONUCLEASE-RELATED
Paelopatides54568ENZYMATIC POLYPROTEIN-RELATED
Paelopatides54569
Paelopatides54570S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE
Paelopatides54571S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE
Paelopatides54572S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE
Paelopatides54573
Paelopatides54574ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54575
Paelopatides54576EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
Paelopatides54577EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
Paelopatides54580POLYCYSTIN FAMILY MEMBER
Paelopatides54581NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides54582MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides54583MONOCARBOXYLATE TRANSPORTER
Paelopatides54584REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54586ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54587ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54588ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED
Paelopatides54589SREK1IP1 FAMILY MEMBER
Paelopatides54590HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54591HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54592RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides54593UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
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