About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54215UNCHARACTERIZED
Paelopatides54216GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides54217PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides54218
Paelopatides54219
Paelopatides54220OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides5422160S RIBOSOMAL PROTEIN L31
Paelopatides54222IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides54223EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides54224EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides54225EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides54226
Paelopatides54227REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54228METHYLMALONYL-COA MUTASE
Paelopatides54229HYALURONAN MEDIATED MOTILITY RECEPTOR
Paelopatides54230ACYL-COA SYNTHETASE
Paelopatides54231EPM2A-INTERACTING PROTEIN 1
Paelopatides54232ACYL-COA SYNTHETASE
Paelopatides54233CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54234ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides54235ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides54236NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides54237
Paelopatides54238
Paelopatides54239DISCS LARGE
Paelopatides54240UNCHARACTERIZED
Paelopatides54241
Paelopatides54242RFX TRANSCRIPTION FACTOR FAMILY
Paelopatides54243ISOMERASE
Paelopatides54244SIMILAR TO HYPOTHETICAL PROTEIN MGC34837
Paelopatides54245ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54246ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54247CRUMBS FAMILY MEMBER
Paelopatides54248CRUMBS FAMILY MEMBER
Paelopatides54249CRUMBS FAMILY MEMBER
Paelopatides54250NUCLEOTIDE KINASE
Paelopatides54251HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED
Paelopatides54252E3 UBIQUITIN-PROTEIN LIGASE PRAJA
Paelopatides54253CALRETICULIN AND CALNEXIN
Paelopatides54254
Paelopatides54255PROMININ PROM PROTEIN
Paelopatides54256PROMININ PROM PROTEIN
Paelopatides54257TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
Paelopatides54258
Paelopatides54259WD40 REPEAT DOMAIN 95
Paelopatides54260REVERSE TRANSCRIPTASES
Paelopatides54261WD40 REPEAT DOMAIN 95
Paelopatides54262BUCENTAUR RELATED
Paelopatides54263WD40 REPEAT DOMAIN 95
Paelopatides54264
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