The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides54265 | |
| Paelopatides54266 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| Paelopatides54267 | LEUCINE RICH REPEAT FAMILY PROTEIN |
| Paelopatides54270 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
| Paelopatides54271 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
| Paelopatides54272 | RAN BINDING PROTEIN |
| Paelopatides54273 | - |
| Paelopatides54274 | |
| Paelopatides54275 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides54276 | |
| Paelopatides54277 | TYROSINE-PROTEIN KINASE |
| Paelopatides54278 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides54279 | |
| Paelopatides54280 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides54281 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides54282 | |
| Paelopatides54283 | |
| Paelopatides54284 | |
| Paelopatides54285 | DESTABILASE-RELATED |
| Paelopatides54286 | |
| Paelopatides54287 | UNCHARACTERIZED |
| Paelopatides54288 | UNCHARACTERIZED |
| Paelopatides54289 | |
| Paelopatides54290 | DRAB5-RELATED |
| Paelopatides54291 | |
| Paelopatides54292 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
| Paelopatides54293 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides54294 | |
| Paelopatides54295 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides54296 | RETROTRANSPOSON |
| Paelopatides54297 | RETROTRANSPOSON |
| Paelopatides54298 | RETROTRANSPOSON |
| Paelopatides54299 | PROTEIN CBG26694 |
| Paelopatides54300 | BAT4 PROTEIN-RELATED |
| Paelopatides54301 | PROTEIN CBG26694 |
| Paelopatides54302 | DOM-3 RELATED |
| Paelopatides54303 | REVERSE TRANSCRIPTASES |
| Paelopatides54304 | NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED |
| Paelopatides54305 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides54306 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
| Paelopatides54307 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides54308 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides54309 | SOLUTE CARRIER FAMILY 39 |
| Paelopatides54310 | PATHOGENESIS-RELATED FAMILY PROTEIN |
| Paelopatides54311 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides54312 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides54313 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides54314 | PROTEIN CBG26694 |
| Paelopatides54315 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Paelopatides54316 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
