About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides01740-
Paelopatides01741-
Paelopatides01743DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides01744REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides01745PROTEIN CBG26694
Paelopatides01746-
Paelopatides01747PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides01748C2 DOMAIN-CONTAINING PROTEIN
Paelopatides01749SLEI FAMILY PROTEIN
Paelopatides01750PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides01751LEUCOKININ RECEPTOR-RELATED
Paelopatides01752REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides017533-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED
Paelopatides01754METHIONINE AMINOPEPTIDASE
Paelopatides01755-
Paelopatides01756-
Paelopatides01757ACYL-COA DEHYDROGENASE
Paelopatides01758HYPOTHETICAL PROTEIN LOC689986
Paelopatides01759ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides01760NADH-UBIQUINONE OXIDOREDUCTASE
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