The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides45056 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| Paelopatides45057 | |
| Paelopatides45058 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Paelopatides45059 | |
| Paelopatides45060 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73 |
| Paelopatides45061 | |
| Paelopatides45062 | TYROSINE-PROTEIN KINASE |
| Paelopatides45063 | |
| Paelopatides45064 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides45065 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Paelopatides45066 | |
| Paelopatides45067 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Paelopatides45068 | |
| Paelopatides45069 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides45070 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides45071 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides45072 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides45073 | |
| Paelopatides45074 | MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7 |
| Paelopatides45075 | RIBONUCLEASE |
| Paelopatides45076 | RIBONUCLEASE |
| Paelopatides45077 | DNA2/NAM7 HELICASE FAMILY |
| Paelopatides45078 | YIPPEE DOMAIN-CONTAINING PROTEIN |
| Paelopatides45079 | |
| Paelopatides45080 | ACID PHOSPHATASE-RELATED |
| Paelopatides45081 | ACID PHOSPHATASE-RELATED |
| Paelopatides45082 | SCAVENGER RECEPTOR CLASS F |
| Paelopatides45083 | |
| Paelopatides45084 | |
| Paelopatides45085 | |
| Paelopatides45086 | |
| Paelopatides45087 | EXPRESSED PROTEIN |
| Paelopatides45088 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
| Paelopatides45089 | REVERSE TRANSCRIPTASES |
| Paelopatides45090 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| Paelopatides45091 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Paelopatides45092 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| Paelopatides45093 | MACROGLOBULIN / COMPLEMENT |
| Paelopatides45094 | |
| Paelopatides45095 | INVERTED FORMIN-2 |
| Paelopatides45096 | INVERTED FORMIN-2 |
| Paelopatides45097 | PROTEIN CBG26694 |
| Paelopatides45098 | |
| Paelopatides45099 | |
| Paelopatides45100 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
| Paelopatides45101 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
| Paelopatides45102 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides45103 | POL PROTEIN |
| Paelopatides45104 | NEUROTRANSMITTER GATED ION CHANNEL |
| Paelopatides45105 |
