About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_10588-2.21
Bpl_scaf_10588-2.4
Bpl_scaf_10588-2.6REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATED
Bpl_scaf_10588-3.11UBIQUILIN
Bpl_scaf_10588-3.18
Bpl_scaf_10588-3.9DNA POLYMERASE SUBUNIT GAMMA-1
Bpl_scaf_10588-4.0
Bpl_scaf_10588-4.1060S RIBOSOMAL PROTEIN L4
Bpl_scaf_10588-4.11GAMMA TUBULIN COMPLEX PROTEIN
Bpl_scaf_10588-4.6EXPRESSED PROTEIN
Bpl_scaf_10588-5.13
Bpl_scaf_10588-5.17CST COMPLEX SUBUNIT CTC1
Bpl_scaf_10588-5.18
Bpl_scaf_10592-0.3
Bpl_scaf_10592-0.6
Bpl_scaf_106-0.4
Bpl_scaf_10603-0.2
Bpl_scaf_10603-0.6
Bpl_scaf_10612-0.21PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_10612-0.51INHIBITOR OF APOPTOSIS
Bpl_scaf_10612-0.52PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_10612-0.53PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_10612-0.55PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_10613-0.7UBIQUITIN-ACTIVATING ENZYME E1
Bpl_scaf_10613-0.9
Bpl_scaf_10613-1.21SODIUM-BILE ACID COTRANSPORTER
Bpl_scaf_10613-1.6CHITIN SYNTHASE
Bpl_scaf_10613-1.8LD44032P
Bpl_scaf_10613-3.5DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED
Bpl_scaf_10613-4.0
Bpl_scaf_10613-4.14MULTI-COPPER OXIDASE
Bpl_scaf_10613-4.3
Bpl_scaf_10613-5.5
Bpl_scaf_10613-5.7
Bpl_scaf_10613-5.8
Bpl_scaf_10613-6.5CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_10613-6.7GLUCOSE REPRESSIBLE PROTEIN MAK10
Bpl_scaf_10613-6.8XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Bpl_scaf_10622-0.8TORSIN
Bpl_scaf_10635-0.14CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA
Bpl_scaf_10635-0.15CYTOCHROME P450 FAMILY 4
Bpl_scaf_10646-0.4
Bpl_scaf_10673-0.11GUANINE NUCLEOTIDE EXCHANGE FACTOR
Bpl_scaf_10673-0.21
Bpl_scaf_10673-0.8
Bpl_scaf_10673-0.9CYTOSKELETON-ASSOCIATED PROTEIN 4
Bpl_scaf_10686-0.1
Bpl_scaf_10686-0.12CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED
Bpl_scaf_10686-0.15
Bpl_scaf_10700-0.15SAM-DEPENDENT METHYLTRANSFERASE
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