Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_10772-3.7 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| Bpl_scaf_10772-3.8 | COILED-COIL DOMAIN-CONTAINING PROTEIN 102A |
| Bpl_scaf_10772-4.6 | RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN |
| Bpl_scaf_10772-4.7 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_10772-5.4 | HL07962P-RELATED |
| Bpl_scaf_10772-5.6 | ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR |
| Bpl_scaf_10772-5.8 | TRANSCRIPTION FACTOR E2F |
| Bpl_scaf_10772-6.10 | PHOSPHOLIPID SCRAMBLASE-RELATED |
| Bpl_scaf_10772-6.7 | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED |
| Bpl_scaf_10772-6.8 | |
| Bpl_scaf_10772-7.10 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Bpl_scaf_10772-7.5 | |
| Bpl_scaf_10777-0.8 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Bpl_scaf_10777-0.9 | CADHERIN-87A |
| Bpl_scaf_10777-1.12 | CADHERIN-23 |
| Bpl_scaf_10777-1.5 | CADHERIN-23 |
| Bpl_scaf_10791-1.1 | MIP08469P |
| Bpl_scaf_10791-1.11 | DNAJ HOMOLOG SUBFAMILY C MEMBER 10 |
| Bpl_scaf_10791-1.28 | |
| Bpl_scaf_10791-1.3 | |
| Bpl_scaf_10791-1.9 | DNAJ HOMOLOG SUBFAMILY C MEMBER 10 |
| Bpl_scaf_10799-0.3 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_10799-1.0 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_10800-1.14 | |
| Bpl_scaf_10800-1.15 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| Bpl_scaf_10800-1.16 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| Bpl_scaf_10800-1.9 | |
| Bpl_scaf_10809-0.8 | NG37 |
| Bpl_scaf_10809-0.9 | |
| Bpl_scaf_10809-1.11 | REMODELING AND SPACING FACTOR 1 |
| Bpl_scaf_10809-1.5 | |
| Bpl_scaf_10809-1.8 | TRANSPOSON |
| Bpl_scaf_10812-0.2 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_10817-0.2 | |
| Bpl_scaf_10817-1.12 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_10817-1.13 | |
| Bpl_scaf_10834-0.1 | |
| Bpl_scaf_10835-0.2 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_10836-0.1 | SULFOTRANSFERASE SULT |
| Bpl_scaf_10838-0.0 | |
| Bpl_scaf_10838-0.1 | |
| Bpl_scaf_10840-0.0 | |
| Bpl_scaf_10840-0.3 | |
| Bpl_scaf_10841-0.2 | |
| Bpl_scaf_10841-0.4 | O-ACYLTRANSFERASE |
| Bpl_scaf_10841-1.4 | O-ACYLTRANSFERASE |
| Bpl_scaf_10841-2.0 | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
| Bpl_scaf_10841-2.12 | CEREBELLIN-RELATED |
| Bpl_scaf_10841-2.13 | CEREBELLIN-RELATED |
| Bpl_scaf_10841-2.16 | CEREBELLIN-RELATED |
