Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_10841-2.17 | CEREBELLIN-RELATED |
| Bpl_scaf_10841-2.50 | O-ACYLTRANSFERASE |
| Bpl_scaf_10841-2.52 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| Bpl_scaf_10849-0.1 | T7-LIKE MITOCHONDRIAL DNA HELICASE |
| Bpl_scaf_10856-1.13 | FRIZZLED |
| Bpl_scaf_10856-1.7 | METAXIN RELATED |
| Bpl_scaf_10856-2.13 | |
| Bpl_scaf_10856-2.14 | |
| Bpl_scaf_10856-2.15 | |
| Bpl_scaf_10856-2.6 | |
| Bpl_scaf_10856-2.7 | FRIZZLED |
| Bpl_scaf_10857-0.0 | |
| Bpl_scaf_10858-0.17 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| Bpl_scaf_10859-0.2 | DESMOGLEIN FAMILY MEMBER |
| Bpl_scaf_1086-0.11 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_1086-0.13 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_1086-0.18 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_1086-0.24 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_1086-0.4 | |
| Bpl_scaf_10866-0.3 | TETRASPANIN |
| Bpl_scaf_10866-1.6 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11 |
| Bpl_scaf_10866-1.7 | RIBOSOMAL PROTEIN S6 KINASE |
| Bpl_scaf_10866-2.17 | NGD5/OSM-6/IFT52 |
| Bpl_scaf_10866-2.18 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| Bpl_scaf_10866-2.19 | SPERMATOGENESIS-ASSOCIATED PROTEIN 6 SPATA6 |
| Bpl_scaf_10866-2.24 | UNCHARACTERIZED |
| Bpl_scaf_10866-2.27 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| Bpl_scaf_1087-0.4 | |
| Bpl_scaf_1087-2.9 | PYRIDOXAL KINASE |
| Bpl_scaf_1087-3.0 | |
| Bpl_scaf_1087-3.3 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| Bpl_scaf_1087-4.15 | NUCLEOTIDE KINASE |
| Bpl_scaf_1087-4.20 | |
| Bpl_scaf_1087-5.18 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_1087-5.19 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_1087-5.22 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_1087-5.23 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_1087-5.7 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_1087-6.8 | |
| Bpl_scaf_1087-6.9 | |
| Bpl_scaf_1088-0.0 | |
| Bpl_scaf_11095-0.10 | RIBULOSE-5-PHOSPHATE-3-EPIMERASE |
| Bpl_scaf_11095-0.11 | ARMADILLO-TYPE FOLD-RELATED |
| Bpl_scaf_11095-0.23 | UNCHARACTERIZED |
| Bpl_scaf_11095-0.6 | PROTEIN ZERKNUELLT 1-RELATED |
| Bpl_scaf_11097-0.4 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_11097-0.8 | THAP DOMAIN-CONTAINING |
| Bpl_scaf_11098-0.16 | ACROSIN-RELATED |
| Bpl_scaf_11098-0.9 | ACYL-COENZYME A SYNTHETASE |
| Bpl_scaf_11099-0.13 | LIPOXYGENASE |
